Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1205 ATGGTTCTCAAAACTGAACTCTGCCGATTCAGTGGTGCCAAGATATACCCTGGGAAAGGAATCAGATTTGTTCGTTCAGATTCTCAGGTGTTTCTATTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAACATAAAAAGGATATTGCTCAAGAGGCTGTAAAGAAGAGGCGTCGTGCCACCAAAAAGCCCTACTCTAGGTCCATTGTGGGTGCTACATTGGAGGTTATCCAGAAGAGAAGAACCGAGAAAGCAGAAGTCAGAGATGCTGCCAGGGAGGCTGCTCTTCGTGAAATTAAGGAAAGAATCAAGAAGACCAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGATGGCTAAGGTGCAGAAGACACAGGGCAAGGGTAACGTTCCCAAGGGTGCTGCTGCTCCAAAGGGCCCTAAAATTGGAGGTGGTGGTGGTAAGCGCTGA 498 0.4739 MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKRRTEKAEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKVQKTQGKGNVPKGAAAPKGPKIGGGGGKR* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1205 165 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vvi8g1205 165 FunFam 60S ribosomal protein L24 3 64 - -
Vvi8g1205 165 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vvi8g1205 165 MobiDBLite consensus disorder prediction 121 165 - -
Vvi8g1205 165 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vvi8g1205 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Vvi8g1205 165 SMART 4TRASH 8 46 IPR011017 -
Vvi8g1205 165 Gene3D - 69 138 - -
Vvi8g1205 165 MobiDBLite consensus disorder prediction 121 136 - -
Vvi8g1205 165 Coils Coil 112 136 - -
Vvi8g1205 165 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vvi8g1205 165 PANTHER 60S RIBOSOMAL PROTEIN L24 4 149 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1205 Vvi-Chr8 18192351 18195686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1205 1 158 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.810 4.44e-86 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1205 K02896 - vvi:100245887 243.817