Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1204 ATGGAGGTTAAGCACCCAGTATCAGCGGAGACAGCCCATGCAATGGTTCGGCCTATGGACAAGAGTAGTTATGGAAACCAGGAAAAGAAGAAGCGACTAACAAATGAACAGCTAGAGTCGCTGGAGAGGAGTTTCCAGGAGGAGATAAAGCTCGAACCAGATAGAAAAATGAAGCTAGCACGAGAGCTTGGGCTCCAGCCGCGACAAATCGCAGTTTGGTTCCAGAACAGGCGCGCTAGGTGGAAGACGAAGGAGCTGGAACGCTTATATGATGTCCTTAAACAAGAGTACGATCTCATGTCCAAGGAGAAGCAAAAGCTCCAAGAAGAGGTTTCAAAATTGAAAGGTATCCTTAGGGAGCAGGCGACTAGGAAGCAAGTATCCATGGGCTACACAGAGGTTTCCGGGGAAGAGACTGTGGAGAGCACATCCATCACGATTCGTAGCTCCAACAAGCCACGAGGATTAAGTCATCAAATTGCTGACTGCAACTATGTGTACACCGCGGAGGAATATAACCCAGTGTCGCCCCCTTATTGGGGTGTTCTGCCGCCTTATCCTTCAACCTAG 570 0.4912 MEVKHPVSAETAHAMVRPMDKSSYGNQEKKKRLTNEQLESLERSFQEEIKLEPDRKMKLARELGLQPRQIAVWFQNRRARWKTKELERLYDVLKQEYDLMSKEKQKLQEEVSKLKGILREQATRKQVSMGYTEVSGEETVESTSITIRSSNKPRGLSHQIADCNYVYTAEEYNPVSPPYWGVLPPYPST* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1204 189 MobiDBLite consensus disorder prediction 1 37 - -
Vvi8g1204 189 SMART HOX_1 27 88 IPR001356 GO:0003677
Vvi8g1204 189 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 20 139 IPR045224 GO:0003700
Vvi8g1204 189 Pfam Homeodomain 29 82 IPR001356 GO:0003677
Vvi8g1204 189 Coils Coil 24 44 - -
Vvi8g1204 189 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Vvi8g1204 189 Coils Coil 76 124 - -
Vvi8g1204 189 MobiDBLite consensus disorder prediction 23 37 - -
Vvi8g1204 189 PRINTS Lambda-repressor HTH signature 55 64 IPR000047 GO:0003677
Vvi8g1204 189 PRINTS Lambda-repressor HTH signature 64 80 IPR000047 GO:0003677
Vvi8g1204 189 SUPERFAMILY Homeodomain-like 16 85 IPR009057 -
Vvi8g1204 189 CDD homeodomain 29 85 IPR001356 GO:0003677
Vvi8g1204 189 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Vvi8g1204 189 Gene3D - 26 88 - -
Vvi8g1204 189 FunFam Putative homeobox-leucine zipper protein ATHB-51 26 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1204 Vvi-Chr8 18188078 18188819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1204 29 114 Homeobox Transcription Factor Family AT5G03790 76.744 3.97e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi8g1204 Homeodomain 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1204 - - vvi:100251028 358.221