Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1202 ATGGAGTCCAGTAGTTTGCCTGGTGGAATGTTTTCTAGTATGGGTACTGGTATGCTAGGCCTAGAAATGCCTCTACAGCAACCGCAACAACAGCAAAACCCTCAAAATCCTCACCACACACACCACCACACCCACCTCCAACAGCACCCCCAAATGGTTGCTTTTGCCCACCCCGATCCTGATCACCACTCACAATCTCAGCAGCCTGTGAAACATGGATACCCATATGTCACTAAAGCCAAACAACAGCTAACACTGAGCGATGAGGATGAGCCTGGACTCACGGGTGATGACAGCACTGCCGACGGGAAAAGAAAGGTGTCTCCTTGGCATAGAATGAAATGGACTGATAATATGGTGAGGTTGTTGATAATGGCAGTTTTTTATATTGGCGATGAAGGTGGGTCCGAGTGTAGTGACCCCTCCGCCAAGAAGAAGACCGGTGGATTGTTGCAGAAGAAAGGGAAATGGAAATCGGTGTCAAGAGCTATGATGGAGAAGGGGTTTTACGTGTCTCCGCAGCAGTGTGAAGACAAGTTCAATGATCTGAACAAGAGGTATAAGAGGGTTAATGATATACTGGGTAAGGGGACGGCGTGCCGGGTTGTGGAGAATCAGAGTTTACTCGACACGATGGACCAGCTATCGCCCAAAATGAAGGACGAAGTTCGAAAATTACTCAATTCGAAGCACCTATTTTTCAGGGAAATGTGTGCTTACCACAATAGCTGCGGTGGTGGTGGGACTTCTGGTGCCCATCCCTCACCACCGGATACAGCGGTGGAGCCCCCTCAGCACCAGCAGCAACAGCAACAGCATCAGCATCAGCATCAGCAGCGGTGTTTGCATTCCTCAACCGAAATTGCCACAATAGGGCCTAATGCGAGTAGAGCAGAGACGGAGGCATCGAAGATGGTGAAAATGGGGAGCGGGGAAGAAGATGAAGATGACGACGAGGACTATGAAGATGGAGACGATGATGATGATGAAGAGGAGGTTGTAGAAGGGGGTGTAAGGAGTCAAAATGAGCATGGGCATGAAGATGACGATGACAATGAGGGAGGATATTCAAGAAAAAGGGCGAGAAAGGGGCTGTTCCCATCACCATCGCCATCACCATTGATGAGGCAATTGAGCAGTGAGGTGATGAGCGTGCTGCAAGATGGAACAAAGAGCACATTGGAGAAGAAGCAATGGATGAGGAGCCGGATGATGCAATTGGAGGAGCAGAGGGTGAGCTACCAATGTAAAGCGTTTGAGCTGGAAAAGCAGCGGTTGAAGTGGGTGAAATTCAGCAGCAAGAAGGAGAGGGAAATGGAAAGGGAGAAGCTGGTGAACCAGCGAAAGAGGCTGGAAAACGAGAGAATGGCACTTCTACTTAGGCAGAAAGAGGTGGAGTTGCTTGAGATTCATCATCAACAACAGCAACAACAGCACTCTTCCAACAAGAGGGGTGAAATATCCTCTTTTGCTGGATGA 1479 0.4909 MESSSLPGGMFSSMGTGMLGLEMPLQQPQQQQNPQNPHHTHHHTHLQQHPQMVAFAHPDPDHHSQSQQPVKHGYPYVTKAKQQLTLSDEDEPGLTGDDSTADGKRKVSPWHRMKWTDNMVRLLIMAVFYIGDEGGSECSDPSAKKKTGGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDQLSPKMKDEVRKLLNSKHLFFREMCAYHNSCGGGGTSGAHPSPPDTAVEPPQHQQQQQQHQHQHQQRCLHSSTEIATIGPNASRAETEASKMVKMGSGEEDEDDDEDYEDGDDDDDEEEVVEGGVRSQNEHGHEDDDDNEGGYSRKRARKGLFPSPSPSPLMRQLSSEVMSVLQDGTKSTLEKKQWMRSRMMQLEEQRVSYQCKAFELEKQRLKWVKFSSKKEREMEREKLVNQRKRLENERMALLLRQKEVELLEIHHQQQQQQHSSNKRGEISSFAG* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1202 492 MobiDBLite consensus disorder prediction 471 492 - -
Vvi8g1202 492 MobiDBLite consensus disorder prediction 312 334 - -
Vvi8g1202 492 Coils Coil 434 461 - -
Vvi8g1202 492 MobiDBLite consensus disorder prediction 26 48 - -
Vvi8g1202 492 Gene3D - 115 189 - -
Vvi8g1202 492 Pfam Myb/SANT-like DNA-binding domain 112 239 IPR044822 -
Vvi8g1202 492 MobiDBLite consensus disorder prediction 335 360 - -
Vvi8g1202 492 MobiDBLite consensus disorder prediction 85 105 - -
Vvi8g1202 492 MobiDBLite consensus disorder prediction 262 297 - -
Vvi8g1202 492 MobiDBLite consensus disorder prediction 470 492 - -
Vvi8g1202 492 MobiDBLite consensus disorder prediction 247 374 - -
Vvi8g1202 492 PANTHER F16F4.11 PROTEIN-RELATED 1 470 - -
Vvi8g1202 492 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1202 Vvi-Chr8 18167394 18168872 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi8g1202 Myb_DNA-bind_4 8.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1202 - - vvi:100259589 842.032