Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1200 ATGGCGTCGTGCGACGACGACTTCTCTCTCCTCGGTGACGACACCACCCAGACAAACCCTAGCCACCACCACCACCACCACCTACCTCATCACCACCACCTCCACCACCCCCACCACCACCATCAGCCATTTGCTTCTGCCCGGTTTTCTCCTAAGCCTATTCAAATCCACGCGCCACCGCCCCCTCCTCCACAACCCATCCTCAATCATTCTGCCGTCGCCGCTGGTGGTAGTCCTGAGAAGATCGCCTCCGGCGTCGGAGAGGAAGAAGACGATACCGATGGATATACTGACGCCGCGTTCTGTACCCAGGGCGATACCAAGTGTCCGGCGGCGTTTCCCGACGTCAACCCTTTTTCTGAGGAGGATCCGACTCCGTTTGAAGAGGATTCGGATCCGAACAAAGCAAGGGGCAGTGTAAGGAATGAAAAGCGAAAGGATCGGGAGGAGCTCAGTGATGGAGGAACCGCGTGTTGTTACAGAAAACAGAAAATTCCCGGCGGTGGAGCTGTGTCCACCACCTCCACGGCGGCCGGCGGTGGAGAATACAGAAACGAGTATAGGAAGGATCGGGAGGAGTGGAGCGATACGGCTATCGGATGTCTCCTTGAGGCGTACATGGAGAAGTTCACTCAGCTGAATCGGGGAAATCTTCGGGGTAGAGACTGGGAGGAGGTGGCGGCGATAGTGAGTGAGCGATGCGATAAGCAATCGAAGAGCGTGGAGCAGTGCAAGAACAAGGTGGATAATTTGAAGAAAAGGTATAAGTTGGAGAGGCATCGGATGAGTAATGGGGGCGTTTCCGCTAGTCACTGGCCTTGGTTTAAGAAGATGGAGGAGATTGTTGGGAATTCTTTGCCAGTGAAAGCGGTTTCTGATGAAGATAAGAGTATTGTCGCTTCAGGTAATATGCTTCGGCAATCTAAGAGATTTGCAATGGCTACTCCCAGTCCTGTTGGTCAGATAAATAATGTGAAGTCCAAATCGATTTCAAATCCTAGATGGCGGAGAGTAGTCTTCAAAATTAGCGGTGCTGCTCTTGCTGGCACTGGCCCTCACAATATTGACCCAAAGGTGGCCATGTTGATTGCAAGAGAAGTAGCGGTGGCCTGCCGCCTTGGTGTAGAGGTTGCAATTGTTGTCGGAGGCAGAAATTTCTTTTGCGGAGACACGTGGGTAACTGCAACTGGTCTAGATAGACCTACTGCCTATCAGATAGGTATGATGGCAACTGTCATGAATTCTATATTGCTCCAGTCAGCCTTAGAGAAGATGGGTGTTCAGACACGTGTGCAAACCGCATTTGCAATGCAGGAGGTTGCTGAGCCATACAGTCGGCAACGGGCAATCCGACACCTTGAAAAAGGAAGAGTTGTAATATTTGGTGGTATTGGTGCTGGCACTGGAAATCCACTCTTTTCCACTGATACAGCTGCTGCTCTTCGAGCTTCAGAAATTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACTGCAACTCCAGAAACAATAATGTTACATTTGAGCACATTTCCTTCAGGGAGTTGGTTTCCAGTGGTGCTACCTCCATGGACATGATGGCCATGACATTCTGTGAAGAGAACAGAATTCCTGTTGTGGTTTTCAACCTTCTTGAGCCCGGAAACATTTCAAGAGCATTGTGTGGGGACCAAGTTGGTACACTGATCGATCAAACGGGAAGGATTAGTTAA 1725 0.5026 MASCDDDFSLLGDDTTQTNPSHHHHHHLPHHHHLHHPHHHHQPFASARFSPKPIQIHAPPPPPPQPILNHSAVAAGGSPEKIASGVGEEEDDTDGYTDAAFCTQGDTKCPAAFPDVNPFSEEDPTPFEEDSDPNKARGSVRNEKRKDREELSDGGTACCYRKQKIPGGGAVSTTSTAAGGGEYRNEYRKDREEWSDTAIGCLLEAYMEKFTQLNRGNLRGRDWEEVAAIVSERCDKQSKSVEQCKNKVDNLKKRYKLERHRMSNGGVSASHWPWFKKMEEIVGNSLPVKAVSDEDKSIVASGNMLRQSKRFAMATPSPVGQINNVKSKSISNPRWRRVVFKISGAALAGTGPHNIDPKVAMLIAREVAVACRLGVEVAIVVGGRNFFCGDTWVTATGLDRPTAYQIGMMATVMNSILLQSALEKMGVQTRVQTAFAMQEVAEPYSRQRAIRHLEKGRVVIFGGIGAGTGNPLFSTDTAAALRASEINADAVLKGTNVDGVYDCNSRNNNVTFEHISFRELVSSGATSMDMMAMTFCEENRIPVVVFNLLEPGNISRALCGDQVGTLIDQTGRIS* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1200 574 MobiDBLite consensus disorder prediction 15 72 - -
Vvi8g1200 574 Hamap Uridylate kinase [pyrH]. 333 568 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vvi8g1200 574 FunFam Aspartate/glutamate/uridylate kinase family protein 194 257 - -
Vvi8g1200 574 MobiDBLite consensus disorder prediction 77 96 - -
Vvi8g1200 574 Pfam Amino acid kinase family 337 547 IPR001048 -
Vvi8g1200 574 Pfam Myb/SANT-like DNA-binding domain 191 281 IPR044822 -
Vvi8g1200 574 Coils Coil 234 261 - -
Vvi8g1200 574 MobiDBLite consensus disorder prediction 54 68 - -
Vvi8g1200 574 Gene3D - 194 257 - -
Vvi8g1200 574 MobiDBLite consensus disorder prediction 22 45 - -
Vvi8g1200 574 PANTHER URIDYLATE KINASE 188 573 - -
Vvi8g1200 574 CDD AAK_UMPK-PyrH-Ec 336 568 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vvi8g1200 574 MobiDBLite consensus disorder prediction 129 153 - -
Vvi8g1200 574 FunFam Uridylate kinase isoform A 327 573 - -
Vvi8g1200 574 Gene3D - 325 573 IPR036393 -
Vvi8g1200 574 SUPERFAMILY Carbamate kinase-like 334 567 IPR036393 -
Vvi8g1200 574 MobiDBLite consensus disorder prediction 112 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1200 Vvi-Chr8 18148095 18156901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1200 167 288 Trihelix Transcription Factor Family AT3G14180 40.000 1.88e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi8g1200 AA_kinase 8.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1200 - - vvi:100264768 1090.49