Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1199 ATGGAGTTTTATGCGTTGCCTTTCTCCCTCTCCTTCCTCTCTCTTTCTTTCTCTCTCCTTCTCCTCCTCTCACCCTCTCTGTCTCTCTCTAACGATACCTTTGCACTCTCTCAGTTCCGCTCTCAGACCGACGTCCATGGCACTCTCATCTCCAACTGGACCGGCGCTGACGCCTGCTCTGGCGTGTGGCGTGGCGTCCGTTGTTTCGATGGTCGAGTCGCCGTTCTTTCTCTACCTTCTTTATCTCTCCGTGGCCCCATAGACGCCCTCTCCGGTCTCAACCAGCTACGAATTCTTGATCTTCAGGGCAACCGTCTAAACGGCACTGTTTTGCCCATCGCTAATTGCACCAATCTCAAACTTGTGTACCTCGCTGGAAACGACTTTTCCGGTGAAATTCCGCCAGATTTTTCCTCACTCAGGCGATTGCTCCGGCTGGACCTCTCCGACAACAATCTACGTGGACCCATTCCGGGGTCTCTCTCCAGCTTGCCTCGTCTACTCACTCTTCGACTGGAAAACAATGTCCTCTCCGGTCAAGTCCCGGATCTCTCGGCGTCTCTCCCGAATCTCAAAGAGTTGAATTTGTCTAATAATGGGTTTTACGGGCACTTACCCGAAGGTATGGCGAAGAAATTCGGTGACCGGAGCTTTCAGGGGAATGAAGGGCTATGCGGGTCGAGCCCTTTGCCCGCTTGTTCGTTCACGGAGGCTTCCCCGACGGCCGCTTCTGCCCAAACAGTTCCGTCAAACCCTAGCTCGTTGCCCTCTGCACCAATAATTGATGCGGAGAAGAAACGATCTCGAAAGGGGCTAAGCCCGGGAGCGATTGTGGCAATTGTGATAGCCAATTCAGTGCTATTGCTGGTAGTTGCTTCATTCGTTGTTGCATACTATTGTGGGAGGTATTCAAGGGAGGGCAGTTCGAATTCAAAGGCGGGTAGTGAGGGTGGGAGGAGAAGGAGAAGTGGGAGCAGCTCTGCTAGCGAGAAGAAGAAGGTGTATGCAAGCAATGGAGGTGGAGCAGACAGCGATGGGACCAACGCCACTGATCGAAGCAAGCTTGTGTTTTTTGATAGAAGGAAGCAGTTTGAGCTGGAGGATTTGCTGAGGGCGTCAGCTGAAATGCTCGGGAAAGGGAGCCTGGGGACAGTGTATAAGGCGGTGCTGGATGATGGGTGCACAGTAGCTGTGAAGAGGCTAAAGGATGCAAACCCATGCGCGAGGAAGGAGTTCGAGCAGTATATGGATGTGATTGGGAAGCTTAAGCACCCCAACATTGTGCGCTTCAGAGCCTACTATTATGCCAAGGAAGAAAAGCTCCTAGTGTATGATTATCTCCCCAATGGGAGCTTGCATTCTCTTCTTCATGGAAACCGAGGTCCAGGAAGAATTCCCTTGGACTGGACTACAAGGATTAGCTTGGTGTTAGGGGCTGCTCGAGGCCTTGCCCGAATTCATGAAGAGTACACAGCATCCAAAATACCTCATGGGAATGTCAAATCTTCCAATATACTGCTTGATAAAAATGGTGTGGCTTGCATTTCTGATTTTGGGTTGGCACTGCTTTTGAACCCAGTTCACGCCACTGCAAGACTGGGAGGATACCGTGCTCCGGAGCAGTTGGAAATCAAGAGGCTCTCTCAGAAGGCGGATGTGTACAGCTTTGGGGTGCTGTTGTTAGAAGTACTTACTGGGAGAGCTCCATCACAGTATCCTTCCCCAAGTCGTCCTCGTGTGGAAGAAGAGGAACAAGGGGTGGATTTGCCAAAGTGGGTTAGATCGGTTGTAAAGGATGAATGGACAGCAGAGGTGTTCGATCAAGAACTTTTGAGGTACAAGAACATCGAGGAAGAGCTGGTGGCAATGCTTCAGGTGGGGATGGCCTGTGTTGTGCCACAACCAGAAAAGAGGCCTACCATGTCGGAAGTGGCCAAGATGATCGAGGATATCAGGGTGGAGCAATCTCCTTTGGGAGAGGAGTATGACGAATCACGCAATTCACTTTCACCTTCACTGGCGACCACCGAAGATGGGTTAGCCGGCTACTGA 2052 0.5141 MEFYALPFSLSFLSLSFSLLLLLSPSLSLSNDTFALSQFRSQTDVHGTLISNWTGADACSGVWRGVRCFDGRVAVLSLPSLSLRGPIDALSGLNQLRILDLQGNRLNGTVLPIANCTNLKLVYLAGNDFSGEIPPDFSSLRRLLRLDLSDNNLRGPIPGSLSSLPRLLTLRLENNVLSGQVPDLSASLPNLKELNLSNNGFYGHLPEGMAKKFGDRSFQGNEGLCGSSPLPACSFTEASPTAASAQTVPSNPSSLPSAPIIDAEKKRSRKGLSPGAIVAIVIANSVLLLVVASFVVAYYCGRYSREGSSNSKAGSEGGRRRRSGSSSASEKKKVYASNGGGADSDGTNATDRSKLVFFDRRKQFELEDLLRASAEMLGKGSLGTVYKAVLDDGCTVAVKRLKDANPCARKEFEQYMDVIGKLKHPNIVRFRAYYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHEEYTASKIPHGNVKSSNILLDKNGVACISDFGLALLLNPVHATARLGGYRAPEQLEIKRLSQKADVYSFGVLLLEVLTGRAPSQYPSPSRPRVEEEEQGVDLPKWVRSVVKDEWTAEVFDQELLRYKNIEEELVAMLQVGMACVVPQPEKRPTMSEVAKMIEDIRVEQSPLGEEYDESRNSLSPSLATTEDGLAGY* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1199 683 Gene3D Phosphorylase Kinase; domain 1 342 446 - -
Vvi8g1199 683 Pfam Protein kinase domain 375 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1199 683 MobiDBLite consensus disorder prediction 305 347 - -
Vvi8g1199 683 Gene3D Transferase(Phosphotransferase) domain 1 447 670 - -
Vvi8g1199 683 FunFam pollen receptor-like kinase 1 341 446 - -
Vvi8g1199 683 Gene3D Ribonuclease Inhibitor 31 138 IPR032675 -
Vvi8g1199 683 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vvi8g1199 683 Gene3D Ribonuclease Inhibitor 139 237 IPR032675 -
Vvi8g1199 683 Pfam Leucine rich repeat 142 200 IPR001611 GO:0005515
Vvi8g1199 683 SUPERFAMILY Protein kinase-like (PK-like) 375 648 IPR011009 -
Vvi8g1199 683 CDD STKc_IRAK 377 651 - -
Vvi8g1199 683 SUPERFAMILY L domain-like 30 210 - -
Vvi8g1199 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 653 IPR046959 -
Vvi8g1199 683 SMART LRR_typ_2 93 118 IPR003591 -
Vvi8g1199 683 SMART LRR_typ_2 188 212 IPR003591 -
Vvi8g1199 683 SMART LRR_typ_2 140 163 IPR003591 -
Vvi8g1199 683 SMART LRR_typ_2 164 187 IPR003591 -
Vvi8g1199 683 ProSiteProfiles Protein kinase domain profile. 371 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1199 683 MobiDBLite consensus disorder prediction 657 683 - -
Vvi8g1199 683 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 447 661 - -
Vvi8g1199 683 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 111 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1199 Vvi-Chr8 18144516 18146682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1199 31 677 Receptor kinase-like Gene Family AT2G36570 67.933 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi8g1199 Pkinase 2.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1199 - - vvi:100266483 1253.81