Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1185 ATGGAAGAGAAGGAGAGTACGGTTTCTGGGTCACCCGGGAACTCGGAGGCTGAGTCGCCTCCTGTGAGCGGGGTGGTGCCACAAGTGATGAATATGGCTATAAACATGAGCATGGAGAGAAGTTTGGGAGGTGGTGACGATGGCGGAGGCGTTGGTGGCAACGTAGGTGGTCGTATTAGTGGTGGTGGTGGCGGCGGCAGTGGAAGTTTTGATTTATTGGGGAGGAAAAAGAGAGGGAGGCCGAGAAAGTATGATGCGGATGGGAACTTGAGATTATCGTATGCAGTTTCACCACCACCTGGATTTACTTTGTCATCTCCTTCTTCTGACTTTTCTTCGAAGAGGGGCCGAGGCCGGCCTCCTGGGTCCGGCAACTGGCAGCTTCTGGCTTCTTTAGGTGAACTGTTTGCCAACACAGCAGGAGGGGACTTTACGCCGCATGTGGTGACTGTAAATACAGGAGAGGATGTTGCATCAAAGATCCTCTCCTTTTCTCAAAAGGGTCCTAGAGGAATATGTGTTCTCTCCGCCAATGGAGCTGTTTCGAATGTTACTATTCGCCAGCCCGGTTCTTCTGGCGGTATCTTGACATATGAGGGCCGGTTTGAGATATTATCTTTGTCTGGGTCATTCACGGTCTCTGATTCTGGTGGTGCAAGAAGCAGGACAGGTGGATTAAGTGTCTCATTGGCTGGTCCTGATGGTCGCGTGATAGGTGGTGGAATTGCTGGCATATTGACTGCTGCTGGTCCAATCCAGATTGTTGTCGGCAGCTTCATGCCCAATGGTTACAAGACACACAAAAGGAAGCACCATCGTGAACCTACGACTACCTCCATTATCCCACCTGCCCCAGATACAGTTACAGCTGCAAGACCAATCTCACAAGCAGCACCTGAAGTTGGCCCCTGTCTGAACTCAACATCCCCATCACATGGACAAAGCCATGGAGAAGCAGATGACAGTGTGAACAATAAACAGATTTCAAATGTAATATCTTTGCAGAGCGCTGCTTGGAATGGGTCTGAGCACAAATCTGAACAGAGACCCTCTCCTGACATCAATTTGACGGTGCCCAGTGAATAG 1086 0.5028 MEEKESTVSGSPGNSEAESPPVSGVVPQVMNMAINMSMERSLGGGDDGGGVGGNVGGRISGGGGGGSGSFDLLGRKKRGRPRKYDADGNLRLSYAVSPPPGFTLSSPSSDFSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVASKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVSDSGGARSRTGGLSVSLAGPDGRVIGGGIAGILTAAGPIQIVVGSFMPNGYKTHKRKHHREPTTTSIIPPAPDTVTAARPISQAAPEVGPCLNSTSPSHGQSHGEADDSVNNKQISNVISLQSAAWNGSEHKSEQRPSPDINLTVPSE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1185 361 CDD DUF296 145 259 IPR005175 -
Vvi8g1185 361 MobiDBLite consensus disorder prediction 266 285 - -
Vvi8g1185 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 324 IPR039605 GO:0003680
Vvi8g1185 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 268 - -
Vvi8g1185 361 ProSiteProfiles PPC domain profile profile. 141 284 IPR005175 -
Vvi8g1185 361 Gene3D - 146 278 - -
Vvi8g1185 361 MobiDBLite consensus disorder prediction 299 361 - -
Vvi8g1185 361 FunFam AT-hook motif nuclear-localized protein 1-like 146 277 - -
Vvi8g1185 361 MobiDBLite consensus disorder prediction 1 70 - -
Vvi8g1185 361 MobiDBLite consensus disorder prediction 99 113 - -
Vvi8g1185 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 259 IPR005175 -
Vvi8g1185 361 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Vvi8g1185 361 SMART AT_hook_2 75 87 IPR017956 GO:0003677
Vvi8g1185 361 MobiDBLite consensus disorder prediction 96 122 - -
Vvi8g1185 361 MobiDBLite consensus disorder prediction 301 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1185 Vvi-Chr8 18015641 18020040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1185 73 298 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.545 9.95e-73 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1185 - - vvi:100254577 650.973