Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1177 ATGGAGTTTTGGGGTGTTGAGGTCAAAGCAGGAGAGCCTCTCGAGGTGGTACCTGGGGATGACATGCTTGTTCACATTTCACAGGCTTCTCTCGGAGAAATCAAGAAGGACAAAGGAAATGAGTTGGTTTGTCTATATGCAAATATTGGTGGGCAGAAGCTTGTTCTTGGAACACTTTCTGCCGAGAAATTCCCACAGATCTCGTTTGACTTGGTGTTTGAAAAAAAATTTGAGCTATCCCACAACTGGAAAAATGGGAGTGTGTACTTTTGTGGATATAAAGCTGCTAATTCAGTGGAATCTGAATCATCTGATAGTTCTTCTGATTCTGATTCTGAATTTGAAATTGATCTTCCACATAATACCACTGTGGATAATGGGAAGCCTCAACAGCTTAAGCAAGAGAAACCTGAGTCTGCTGCAGCTAAGCAGGTGAAGATCGTAGAACCAAACAAAGATGCTAAATCACCCAAGGAAAATGATGATGATAGCGACAAAGATAGTGATGAATCAATGGATGATGAAGATGAATCATCTGAGGATGAGGATATGGTCAATGATAGAAGTGCAAGCTCAGAGGATGAAGATGATGATGAGAATGAAGACAATGAGGATGACAAAAATGAAATCTCTAAGAAGAAAGAGACACCAAAGAAGGCTGGACCAAGCAAGAAAAGACCTACAGAGTCTGTTTCAAAAACACCTGTTCCTGATAAGAAGGCAAAATTTGTTACTCCCCAAAAGACTGATGGCAAAAAAAGTGATGACAAAAAGAGTGGTGGTCATGTAGCAACACCTTACCCTTCAAAGCAGGCTGGAAAAACTCCTGCAAACACAGAAAAACCTAAGCAGCAGGTTCAGAAATCTGGTGGATCATTCTCTTGCAAGTCTTGCAACAGGTCATTCAATTCTGAGAATGCTCTACAAAGTCATACCAAGGCCAAGCACACTGCTGCTAAGTAA 963 0.4112 MEFWGVEVKAGEPLEVVPGDDMLVHISQASLGEIKKDKGNELVCLYANIGGQKLVLGTLSAEKFPQISFDLVFEKKFELSHNWKNGSVYFCGYKAANSVESESSDSSSDSDSEFEIDLPHNTTVDNGKPQQLKQEKPESAAAKQVKIVEPNKDAKSPKENDDDSDKDSDESMDDEDESSEDEDMVNDRSASSEDEDDDENEDNEDDKNEISKKKETPKKAGPSKKRPTESVSKTPVPDKKAKFVTPQKTDGKKSDDKKSGGHVATPYPSKQAGKTPANTEKPKQQVQKSGGSFSCKSCNRSFNSENALQSHTKAKHTAAK* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1177 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 320 IPR013087 -
Vvi8g1177 320 MobiDBLite consensus disorder prediction 100 320 - -
Vvi8g1177 320 SMART c2h2final6 293 316 IPR013087 -
Vvi8g1177 320 Pfam Zinc-finger of C2H2 type 293 314 - -
Vvi8g1177 320 MobiDBLite consensus disorder prediction 243 260 - -
Vvi8g1177 320 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Vvi8g1177 320 Gene3D Nucleoplasmin core domain 1 99 - -
Vvi8g1177 320 MobiDBLite consensus disorder prediction 271 313 - -
Vvi8g1177 320 MobiDBLite consensus disorder prediction 163 205 - -
Vvi8g1177 320 MobiDBLite consensus disorder prediction 148 162 - -
Vvi8g1177 320 MobiDBLite consensus disorder prediction 206 236 - -
Vvi8g1177 320 ProSitePatterns Zinc finger C2H2 type domain signature. 295 316 IPR013087 -
Vvi8g1177 320 FunFam Histone deacetylase HDT1 1 99 - -
Vvi8g1177 320 Gene3D Classic Zinc Finger 280 319 - -
Vvi8g1177 320 SUPERFAMILY beta-beta-alpha zinc fingers 287 315 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1177 Vvi-Chr8 17963002 17966714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1177 1 319 C2H2 Transcription Factor Family AT5G03740 45.122 8.76e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g1177 NPL 2.7e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1177 - - vvi:100252840 534.258