Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1174 ATGGAAATGCCTGGTAAAAGATCGAACTACTCTCTCCTCAGTCAGTTTCCCGACGACCAGTTCGTCGGCGGAGCGGCCGGAAATCAGCCTCCCTTATACGAGTCCCTTTCTGGGGAGAAGAGCAAAGGGAAAGGCTTTGATTGGGATGGTGGTGATCTTAGGAACCGGATCGGGAACTTGTTCACTACGTCGATCGGGTTGCAGCGGCAGTCCAGCGGCAGTAGCTTCGGCGAAAGCACTCTGTCGGGGGAGTATTACGTGCCGACGATGTCGATGGCGGCGTCGAGCGACTTCGATGCGTTTGGGGATGTGTTTAAGGTTGGTGGTGGCGGAGGCGCAGAATTGAGGGCCAAGGCAGTGACCGGGACTGGGGACTCGTCGTCGTCCAAGAGTTGGGCACAGCAGACGGAGGAGAGTTACCAATTGCAGTTGGCGTTGGCGCTTCGGCTTTCGTCGGAGGCCACCTGTGCTGATGATCCCAATTTCTTGGATCCAGTGCCAGACGACTCGGCGTCCAGGTCGTTATCGTCGTCCGGGAGTTCGGTCGAGGCTATGTCTCATCGATTCTGGGTGAGTGGCTGCCTATCATATTTCGACAAAGTTCCTGATGGATTTTACCTAATTCACGGGATGGATCCATATGTGTGGACTGTATGCAATGATTTGAGAGAAAATGGTCGTATTCCTTCCATTGAATCACTAAAGCATGCTGAGCCTAGTGCTGATTCTCCAATTGAAGTTGTTTTGATTGATCGACGTACTGATCCCACTTTGAAGGAATTACAAAATAAGGTTCATGGTATTTCTTGTAGTTGCATGACCACAAAAGAGGTGGTTGATCAGCTTGCAAAGCTTGTCTGCAATTGCATGGGGGGTGCAGCTTCCACTGGAGAAGATGACTTTGTTTCCATCTGGCGGGAGTGCAGTGATGATCAAAAGGATTGTTTAGGATCTATTGTGGTTCCGATTGGTAGCCTGTCCTTTGGTCTCTGCAGACATCGTGCTTTACTGTTCAAAGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTGACAGGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGCTTTCCACGTTCCAAACCAGTTGAAACTAACATTGATTTCAGGTCACTGGCTAAGCAGTATTTCTCAGAATGCCAATCCCTTAATCTTGTTTTTGAAGACACTTCAGTGGGTGTCATTGTTGATGAAGCTGATGGAGGAGATTCCATGTATCCTAAAAAATTTGATAGGAAGTGCACAGATAGAACCCACCTTGTGCCCATTTCAAGAAACAGAGGTGAAACTCCACAGTTGCCTATGCCCCCAAAAGTTGCTTGGCCAAGTGCCCATGATCAAGATTCCCAACTGTTTAAATCATGCAACCCTTATCAGAGCAGTATAAGTCCAACAGATGCAGTCAAAGATCCTATCCCACCAAAGCGTATCCCACTAACTGGGCATGGGGATGTTCAACCATCTTTAGCCTTGTCTGATTTGAGAGGGGATACAATAAAAGATATGAGGTTCACTGATGGAGGCCAATTATATCCAAATAAACCATGCAAGGAACTTTCCCTTGATGTGGAGGATTTGGATATTCCATGGAGTGACCTTGTTTTAAAAGAGAGAATTGGAGCAGGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGGATGTTGCTGTAAAGGTTCTAATGGAACAAGATTTCCATGCAGAACGTTTCAAGGAATTTTTGAGGGAGGTTTCTATAATGAAACGCCTGCGGCATCCGAATATCGTTCTTTTTATGGGTGCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGAGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGATGAGAGGCGTCGATTGAGTATGGCTTATGATGTGGCCAAGGGCATGAATTATCTTCATAAACGCAATCCTCCCATTGTTCATCGAGATTTGAAGTCTCCAAACCTTTTGGTTGACAAAAAATACACCGTGAAGGTTTGTGATTTTGGTCTTTCACGGTTCAAGGCAAATACATTTCTTTCATCCAAATCGGCGGCAGGGACGCCTGAGTGGATGGCACCAGAAGTTCTTCGGGATGAGGCATCAAATGAAAAGTCAGACATATATAGCTTTGGTATAATCTTGTGGGAACTTGCAACATTGCAACAACCTTGGAGTAATTTAAATCCAGCACAGGTTGTAGCAGCTGTTGGTTTTAAGGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTGGCTTCCATAATTGAAGCATGTTGGGCAAATGAGCCTTGGAAGCGCCCTTCCTTTTTCAACATCATGGAATCCTTGAAGCCACTGATTAAACCTCCCACGCCTCAGCCAGTTCGTGCAGATAGACCACTGCTTACCTGA 2577 0.4645 MEMPGKRSNYSLLSQFPDDQFVGGAAGNQPPLYESLSGEKSKGKGFDWDGGDLRNRIGNLFTTSIGLQRQSSGSSFGESTLSGEYYVPTMSMAASSDFDAFGDVFKVGGGGGAELRAKAVTGTGDSSSSKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPVPDDSASRSLSSSGSSVEAMSHRFWVSGCLSYFDKVPDGFYLIHGMDPYVWTVCNDLRENGRIPSIESLKHAEPSADSPIEVVLIDRRTDPTLKELQNKVHGISCSCMTTKEVVDQLAKLVCNCMGGAASTGEDDFVSIWRECSDDQKDCLGSIVVPIGSLSFGLCRHRALLFKVLADTIDLRCRIAKGCKYCTRDDASSCLVRVGPDREFLVDLVGKPGCLCEPDSLLNGPASISISSPLRFPRSKPVETNIDFRSLAKQYFSECQSLNLVFEDTSVGVIVDEADGGDSMYPKKFDRKCTDRTHLVPISRNRGETPQLPMPPKVAWPSAHDQDSQLFKSCNPYQSSISPTDAVKDPIPPKRIPLTGHGDVQPSLALSDLRGDTIKDMRFTDGGQLYPNKPCKELSLDVEDLDIPWSDLVLKERIGAGSFGTVHRADWNGSDVAVKVLMEQDFHAERFKEFLREVSIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKPGAREMLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRFKANTFLSSKSAAGTPEWMAPEVLRDEASNEKSDIYSFGIILWELATLQQPWSNLNPAQVVAAVGFKGKRLEIPRDLNPQVASIIEACWANEPWKRPSFFNIMESLKPLIKPPTPQPVRADRPLLT* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1174 858 ProSitePatterns Protein kinases ATP-binding region signature. 590 611 IPR017441 GO:0005524
Vvi8g1174 858 PRINTS Tyrosine kinase catalytic domain signature 746 756 IPR001245 GO:0004672|GO:0006468
Vvi8g1174 858 PRINTS Tyrosine kinase catalytic domain signature 658 671 IPR001245 GO:0004672|GO:0006468
Vvi8g1174 858 PRINTS Tyrosine kinase catalytic domain signature 699 717 IPR001245 GO:0004672|GO:0006468
Vvi8g1174 858 PRINTS Tyrosine kinase catalytic domain signature 809 831 IPR001245 GO:0004672|GO:0006468
Vvi8g1174 858 PRINTS Tyrosine kinase catalytic domain signature 765 787 IPR001245 GO:0004672|GO:0006468
Vvi8g1174 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Vvi8g1174 858 CDD STKc_MAP3K-like 590 838 - -
Vvi8g1174 858 FunFam Serine/threonine-protein kinase CTR1 663 848 - -
Vvi8g1174 858 Pfam Ethylene-responsive protein kinase Le-CTR1 182 388 - -
Vvi8g1174 858 Pfam Protein tyrosine and serine/threonine kinase 585 838 IPR001245 GO:0004672|GO:0006468
Vvi8g1174 858 ProSiteProfiles Protein kinase domain profile. 584 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1174 858 Gene3D Phosphorylase Kinase; domain 1 577 662 - -
Vvi8g1174 858 SMART serkin_6 584 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1174 858 FunFam Serine/threonine-protein kinase isoform 1 574 662 - -
Vvi8g1174 858 Gene3D Transferase(Phosphotransferase) domain 1 663 849 - -
Vvi8g1174 858 SUPERFAMILY Protein kinase-like (PK-like) 569 837 IPR011009 -
Vvi8g1174 858 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 158 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1174 Vvi-Chr8 17884832 17901832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1174 1 853 MAP Kinase Kinase Kinase AT5G03730 65.006 0.0 1005
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vvi8g1174 PK_Tyr_Ser-Thr 1.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1174 K14510 - vvi:100240856 1701.41