Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1173 ATGCGAGGGAAGAGGCATCTCTTGAAGAACATCCGTAGGCGCAAGTCACCTCAATCCCAGCACACTGGAAGCTATGCTGGGCCTTCTTCTGAAATAGCAATGTCAGGATTGGAAAGTGAGGTAGAGAGGTTAAGGAAGCAGAAGAGTTTGTTGATGCAGGAGGTTATAGAATTGCAGCAACAGCATAGTGGAACAATTCACCAAATGGAAGTAGTTAATGAAAGGATCCAGGCAGCAGAGAAGAGGCAGAAGAAAATGGTCTCATTCTTGGCAAAGTTGCTTCAGAACCCAGAATTTTTAGCCCGCCTTTTGCCCAAGGACGACCAAAAAGATATTGGTGTGCCAAGGATGATGAGGAAGTTTGTCAAGCATCAGAAACTTGAACCTGGTAAATCAGACTCATCCATGGGAGGGCAGATTGTAAAGTACAGACCTGGTTCAGAAAATCTGATTACATCCTCCTTATTCCCACCTTCAAATCCAGACTCTTGTGAACAATTTCCCAATGATTGCTTACAAGTAATTGCAGGGAAACTGGATTTAGGTATGGAAAGTGTGCCATTCGGAACTAGGAAAGTCTCATCAGATGAACTAGCAGCAGTAGCACATAAACTTATTGAAGCTCCAGAGCAGGTCAGAGAGGAAACGGCCAGTTTGGGACCTGTAGGTCTCGTATTTAAAGGAAAGAATCTAGTGAGTTCCCAACCAGAAGGAAGCACCAACTATAATCTGTCTTTCATAGATGATTCAACAAAGGAGAAGGCTTTTCCTGAATTCTTGTCCCCTGGGATTGACGGCATTATAAAACAAGCGGATATATGGAGCATGGGCTTTGACGACAGTGCTGATATGACTAGTTCTTGTGGTGAGTTATGGGGTAATGTTACCAACTATGATGTTCCAGACTTAGGACTCACAGGTGGGATATCAGATATCTGGGATTTAGGTTCCCTGCAAGCAGCAGAAGGTTTGGGAATTGATAAGTGGCCATCTGATGAATCCACTTTTAATGAACCTGAGAATCAAGCAGACCAGCCAAAGGACTATACTTCCAAGAATACATATCCATAG 1071 0.4351 MRGKRHLLKNIRRRKSPQSQHTGSYAGPSSEIAMSGLESEVERLRKQKSLLMQEVIELQQQHSGTIHQMEVVNERIQAAEKRQKKMVSFLAKLLQNPEFLARLLPKDDQKDIGVPRMMRKFVKHQKLEPGKSDSSMGGQIVKYRPGSENLITSSLFPPSNPDSCEQFPNDCLQVIAGKLDLGMESVPFGTRKVSSDELAAVAHKLIEAPEQVREETASLGPVGLVFKGKNLVSSQPEGSTNYNLSFIDDSTKEKAFPEFLSPGIDGIIKQADIWSMGFDDSADMTSSCGELWGNVTNYDVPDLGLTGGISDIWDLGSLQAAEGLGIDKWPSDESTFNEPENQADQPKDYTSKNTYP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1173 356 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 147 IPR027725 -
Vvi8g1173 356 Coils Coil 34 61 - -
Vvi8g1173 356 MobiDBLite consensus disorder prediction 335 356 - -
Vvi8g1173 356 MobiDBLite consensus disorder prediction 1 16 - -
Vvi8g1173 356 MobiDBLite consensus disorder prediction 1 32 - -
Vvi8g1173 356 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1173 Vvi-Chr8 17877337 17878407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1173 1 143 HSF AT5G03720 45.890 4.22e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1173 K09419 - vvi:100245950 714.916