Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1171 ATGGAAATGGAAAGTTCTCGTAGATCCTTTGATAGATCGAGAGAGCCGGGCTTCAAGAAACCTCGATTGGCCGAAGAAGCCGAGCGCGGTCCGAACCCTAACGGCCGGCCGTTTCCTCAACGACCCGGAGCGGCTCCGGCGGCGTCGAGGCTTAAAACTAATGAAAGAGATGTAGACAGGGATGATTTGGGTCGCGGACTTTATCAGCAGCAGCATCAAGAGCTTGTGACTCAGTACAAGACTGCACTCGCGGAGCTGACATTCAATTCAAAACCGATCATTACCAATTTGACGATAATTGCAGGGGAGAACCTACATGCTGCCAAGGCCATAGCTGCAACTGTCTGCACTAACATTCTCGAGGTTCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGGTATTCTGCAAGGCATATAGACAAGTTGATCCTTCTATACATCCTGGTATGCGGCATCTTTTTGGAACGTGGAAAGGAGTGTTCCCTCTTGCACCACTTCAGATGATCGAGAAAGAACTTGGCTTCCCTCCAGCCATCAATGGGTCATCTCCAGGAATTGCAACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGACAAAAGGAGCAGCCAATGATGTTACTGGGACCATGGTCAACTCCACTGAGGATGCGGATAGGTTAGACAGAACAGCCGGTATCAATGCTGGAAGGCCATGGGATGATCTTCCGGCTAAGAGCATCCAGCATTCTCACAGAGAAGCAATAGGTGAGCTGGTCGAGAAGAAAATTGGTGCACCATATGGAGATTATGAATATGGTACTGATCTTTCAAGGAATCCTGGCTTGGGAATTGGTAGACCCAGCGAGCAAGGACATGACAAACCTTGGTATAAAGCTGGTGGTAGGGTTGTGGAGACATTTTCCAGCCAAAGAAATGGTTTTGATATCAAGCATGGATTTCCAAATTACCCAGCACCCAGATCTGCAAATGCTGATGCACATCTACAGCCTACACAGAGTACTGTAAATAGAAGCAATTCTGGGATGTCTAGGAGCTGGAAGAACTCTGAGGAAGAGGAATACATGTGGGACGACATGAACTCTAAAATGACAGAGCATAGTGCAGCCAATCACTCAAAGAAAGATCGTTGGACTCCTGATGATTCCGAGAAATTGGATTTTGAAAACCAGCTTCAGAAACCACAAAGCATATATGATGTTGGGTCAAGTGTTGACAGAGAAACTTCCACTGATTCAATGTCCTCAGAACAGAGAGAACAGGGAGCTTTTGGGCACAGGATGTCATCACTGTGGCCATTACAGGAGCCACATTCTACAGATGGACTGAAACATTCAGGCACCAGTACACTTATTTTAGGTCATTCAGAAGGCTACCCTACTGTCAGTGGGTTGTCAACAAGTGCAAGTTCTTCTCTGGCGAGGACAGGCCTTAGACCACTGATGGGGTCATCTCATGCTGGAGCATCAGGTTTTGGGTTTTTGACAAATGCTAGTTCAGGGTCTACTACTGGCACTGTTGGACAACAACGGCTTCAGTCTGTAGGAGCTGCATCACCATCTGGACAGTCACCAATGCACCAGCCAGACCATCTACCAGTTCATTCTTTGCCGCTCCCTGATATAAAAGCCTCTCAATTTTCAGGACAGTTCAACATAGGGTCTCATAAGCAATTTACTCTTGACGCTTTGCCTAAACTAATTCAGAAGGCGCAGCTAGGTGACTTGCAAAAATTGCTTCCCCATAATTTGCAGAGTTTATCTCCTGCAGTGCCATCTGTTCCAATAAGGCACCATGCTCCCTTTTCACCACAGCTACAGCCAGACCCCTTGCAGCCTGAACCTTCTGGTCAAGCGCAGAAAACATCACTACCTCAAACCTCAATCTTTGAAGCTCCCTCAACAATAGAGAATCCTGTGTTAGAGCATTCAAATTATCCTGCTGCAGAAAGTACAGGAAAGTTGAGCACAAGTAATTTGTTGGCCGCAGTTATGAAGAGTGGGATACTATCTAACAGTTCTGTTTCTGGTAGCATTCCTAAAACGAGTTTTCAGGATACAGGGGCAGTGCTACAGTCTGTTATTCAGCCTCCTTTACCGAGCGGACCTCCTCCTGCCCAGTTCACATCCTCAGGACCTAGGGTTGCAACAGCATCTCTATCAGGTCCCTCCCATGATAGCAAATCCGCCTCAAATCTTTCTCAGAGAAAGGTAGAGCGGCCGCCATTGCCACCTGGTCCCCCACCGCCTTCTTCTCTTGCAGGCAGTGGATTACCACAATCTTCAAATGTTACGAGTAATGCATCAAACCCCATTGCTAATCTCTTAAGCTCCTTAGTTGCTAAGGGCTTGATATCTGCATCAAAAACAGAGTCATCAACTCATGTGCCAACTCAGATGCCTGCTCGGCTTCAGAACCAGAGTGCAGGCATTTCTACCATTAGTCCCATACCAGTTTCCTCAGTTTCAGTTGCATCTTCTGTTCCTCTTTCATCTACTATGGATGCGGTTTCTCACACTGAGCCTGCTGCTAAAGCCTCTGTTGCTGTAACACAATCCACCTCAGTGGAGGTAAAAAACCTCATAGGATTTGAGTTTAAGTCAGATATAATTCGGGAGTCACATCCATCAGTTATAAGTGAACTCTTTGATGACCTTCCACATCAGTGCAGCATATGTGGCCTTCGGCTTAAACTTAGAGAACGACTTGATAGACATTTGGAGTGGCATGCTTTGAAAAAGTCTGAGCCAAATGGTCTAAATAGAGCATCAAGGAGTTGGTTTGTAAACTCAGGTGAATGGATAGCCGAAGTTGCAGGATTTCCAACTGAAGCTAAGTCCACTAGTCCGGCAGGAGAGTCTGGGAAACCTTTGGAGACGAGTGAGCAGATGGTTCCTGCAGATGAAAATCAGTGTGTATGTGTTTTGTGTGGTGAAGTGTTTGAAGATTTTTATAGTCAAGAAATGGATAAATGGATGTTCAGAGGAGCTGTGAAGATGACTGTTCCGTCCCAAGGTGGTGAGCTAGGAACTAAAAATCAGGGTCCTATCGTGCATGCTGATTGTATAACAGAAAGTTCTGTTCATGATTTGGGACTGGCTTGTGATATTAAAGTGGAAAAAGATCCATAA 3261 0.4584 MEMESSRRSFDRSREPGFKKPRLAEEAERGPNPNGRPFPQRPGAAPAASRLKTNERDVDRDDLGRGLYQQQHQELVTQYKTALAELTFNSKPIITNLTIIAGENLHAAKAIAATVCTNILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSIHPGMRHLFGTWKGVFPLAPLQMIEKELGFPPAINGSSPGIATSRSDSQSQRPPHSIHVNPKYLEARQRLQQSSRTKGAANDVTGTMVNSTEDADRLDRTAGINAGRPWDDLPAKSIQHSHREAIGELVEKKIGAPYGDYEYGTDLSRNPGLGIGRPSEQGHDKPWYKAGGRVVETFSSQRNGFDIKHGFPNYPAPRSANADAHLQPTQSTVNRSNSGMSRSWKNSEEEEYMWDDMNSKMTEHSAANHSKKDRWTPDDSEKLDFENQLQKPQSIYDVGSSVDRETSTDSMSSEQREQGAFGHRMSSLWPLQEPHSTDGLKHSGTSTLILGHSEGYPTVSGLSTSASSSLARTGLRPLMGSSHAGASGFGFLTNASSGSTTGTVGQQRLQSVGAASPSGQSPMHQPDHLPVHSLPLPDIKASQFSGQFNIGSHKQFTLDALPKLIQKAQLGDLQKLLPHNLQSLSPAVPSVPIRHHAPFSPQLQPDPLQPEPSGQAQKTSLPQTSIFEAPSTIENPVLEHSNYPAAESTGKLSTSNLLAAVMKSGILSNSSVSGSIPKTSFQDTGAVLQSVIQPPLPSGPPPAQFTSSGPRVATASLSGPSHDSKSASNLSQRKVERPPLPPGPPPPSSLAGSGLPQSSNVTSNASNPIANLLSSLVAKGLISASKTESSTHVPTQMPARLQNQSAGISTISPIPVSSVSVASSVPLSSTMDAVSHTEPAAKASVAVTQSTSVEVKNLIGFEFKSDIIRESHPSVISELFDDLPHQCSICGLRLKLRERLDRHLEWHALKKSEPNGLNRASRSWFVNSGEWIAEVAGFPTEAKSTSPAGESGKPLETSEQMVPADENQCVCVLCGEVFEDFYSQEMDKWMFRGAVKMTVPSQGGELGTKNQGPIVHADCITESSVHDLGLACDIKVEKDP* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1171 1086 ProSiteProfiles CID domain profile. 71 199 IPR006569 -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 369 389 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 411 432 - -
Vvi8g1171 1086 SMART 558neu5 74 196 IPR006569 -
Vvi8g1171 1086 SUPERFAMILY ENTH/VHS domain 70 196 IPR008942 -
Vvi8g1171 1086 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1085 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vvi8g1171 1086 ProSitePatterns Zinc finger C2H2 type domain signature. 933 953 IPR013087 -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 352 393 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 1 29 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 1 61 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 408 466 - -
Vvi8g1171 1086 Gene3D - 65 196 IPR008942 -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 737 809 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 202 227 - -
Vvi8g1171 1086 CDD CID_Pcf11 76 184 IPR047415 -
Vvi8g1171 1086 Pfam CID domain 80 180 IPR006569 -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 204 223 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 783 797 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 751 779 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 638 667 - -
Vvi8g1171 1086 ProSiteProfiles Zinc finger C2H2 type domain profile. 931 958 IPR013087 -
Vvi8g1171 1086 FunFam polyadenylation and cleavage factor homolog 4 68 196 - -
Vvi8g1171 1086 MobiDBLite consensus disorder prediction 433 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1171 Vvi-Chr8 17860664 17868923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1171 74 403 C2H2 Transcription Factor Family AT4G04885 41.298 1.37e-55 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1171 K14400 - vvi:100251089 2057.34