Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1165 ATGGCAATGGAAGATCATCATCACTATGGCATGGCTGATCTACGCCAGTTCATGAACACCAGACCCCATTTTCCGCCTATTCCACACCACCCAGACCTCTTCCCCGCCCATCATCACCACCGAACTCTCACTCCAGCTCAACCTTACGACTTGATGATGGTGGGTCGTCAAGTTACTCATGACATGATGTCTCGAGGCCTTCATGATTTTGTTACTGATTCTGCCGCTCCTCCTCCTACTACTACTGCGACCAACACCAACACTGTTGTGCCTACTTCCAATGCCACTCTCACTGGCTTAGATGCCGACGCCGCTTGCCTGGGAGGCGATGCCTCCACCGGAAGGTGGCCCAGACAAGAAACCCTCACCCTTCTTGAAATCAGATCTCGTCTTGATTCAAAATTCAAGGAGGCAAATCAAAAGGGTCCATTGTGGGATGAGGTTTCAAGGATAATGTCCGAAGAACACGGCTACCAAAGGAGTGGAAAGAAATGCAGAGAAAAGTTTGAGAACTTATATAAATATTACAAGAAGACCAAGGAAGGGAAGGCTGGAAGGCAAGATGGTAAGCACTATAGATTCTTCCGACAGCTTGAAGCCCTCTATGGAGACACCAGTAATGCGGTCTCAGTCCCAGAAAATCACCTTGCTGGAAGTAGTCTCACATTCCATACTGCAACCAACCTTAACATAGCCACACAGAATCAAGAAATCTTTCAAACCCCGAAGCTTTGTGATAGTCTTAGCCTCTCTAACTCCTCTGACTTTGATACTTCCTCTTCTGAAGATGATGATCACAATAATACTGGGCCGACGGAGAATGGTTCAACCGACAAGAAAAACAGGAGGAGTCGAAGGAGCTGGAAAGTGAAGATTAAGGACTTTATTGACTCACAGATGAGGAAGCTCATGGAGAAACAAGAGGCATGGTTGGAGAAAATGCTGAAGGCTCTTGAACATAAGGAACAAGAGAGGATATTAAGAGAGGAAGAATGGAGGAAACAGGAGGCGGCTAGGTTAGATAGAGAGCATAAGTTTTGGGCCACTCAGCGAGCATGGATTGAAGCTCGTGACGCTGCTCTGATGGACACCTTGCAAAAATTAACTGGTAGAGAGCTAAAGGTTCCATCTCCAGAGGAGCTAATGGCAACCCAACACCGAAATCCTGGGGAAAGGCAGAATGAGAATGGAAGTGAAACAGTGAGCAACTCCGTGAAGGGTGACAGCTGGCCAGAATCTGAGATTACAAGGCTAATGCAACTGAGAACCAACATGGAATCAAGGTTTCAGCAAGCTGGGTCTTCAGAAGAGGTTCTCTGGGAGGATATTGCAGGCAAGATGGCTTGCTTGGGGTATGATCGGAGTGCCATAATGTGCAAAGACAAATGGAATAGCATCAATAATTATCTTCTGAGAACCAAGGAGTGTAACAAGAAACGCAAGGAAAATTCTAGAAGTTGCACTTACTTTCTGAGCAATGAAACATTATACAATCAAGGAGGAGCCTACTGTGAAATCAGTGAGCCAGGCCCGGAGATGGCCAGACTTCAACCTAATGAGGGCTCCCCGCCTTCTAATTCTAATGCTGGCAGTGCAGTGCCTGATAGCTGCTTTCGCTTCCTGATGGCGGATGGGAATCTATGGGAGAATTATGCCTTGAAGCTCAACAAGGGAGACAACCAGTGA 1686 0.4686 MAMEDHHHYGMADLRQFMNTRPHFPPIPHHPDLFPAHHHHRTLTPAQPYDLMMVGRQVTHDMMSRGLHDFVTDSAAPPPTTTATNTNTVVPTSNATLTGLDADAACLGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGDTSNAVSVPENHLAGSSLTFHTATNLNIATQNQEIFQTPKLCDSLSLSNSSDFDTSSSEDDDHNNTGPTENGSTDKKNRRSRRSWKVKIKDFIDSQMRKLMEKQEAWLEKMLKALEHKEQERILREEEWRKQEAARLDREHKFWATQRAWIEARDAALMDTLQKLTGRELKVPSPEELMATQHRNPGERQNENGSETVSNSVKGDSWPESEITRLMQLRTNMESRFQQAGSSEEVLWEDIAGKMACLGYDRSAIMCKDKWNSINNYLLRTKECNKKRKENSRSCTYFLSNETLYNQGGAYCEISEPGPEMARLQPNEGSPPSNSNAGSAVPDSCFRFLMADGNLWENYALKLNKGDNQ* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1165 561 MobiDBLite consensus disorder prediction 510 530 - -
Vvi8g1165 561 Gene3D - 410 472 - -
Vvi8g1165 561 Gene3D - 116 178 - -
Vvi8g1165 561 PANTHER FI21293P1 75 512 - -
Vvi8g1165 561 ProSiteProfiles Myb-like domain profile. 108 173 IPR001005 -
Vvi8g1165 561 CDD GT1 410 474 - -
Vvi8g1165 561 MobiDBLite consensus disorder prediction 255 285 - -
Vvi8g1165 561 FunFam Trihelix transcription factor GT-2 410 472 - -
Vvi8g1165 561 ProSiteProfiles Myb-like domain profile. 402 467 IPR001005 -
Vvi8g1165 561 FunFam trihelix transcription factor PTL-like 116 178 - -
Vvi8g1165 561 MobiDBLite consensus disorder prediction 376 409 - -
Vvi8g1165 561 Pfam Myb/SANT-like DNA-binding domain 115 201 IPR044822 -
Vvi8g1165 561 Pfam Myb/SANT-like DNA-binding domain 408 490 IPR044822 -
Vvi8g1165 561 MobiDBLite consensus disorder prediction 387 409 - -
Vvi8g1165 561 SMART sant 406 469 IPR001005 -
Vvi8g1165 561 SMART sant 112 175 IPR001005 -
Vvi8g1165 561 CDD GT1 115 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1165 Vvi-Chr8 17800315 17802467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1165 1 561 Trihelix Transcription Factor Family AT5G03680 47.368 4.26e-153 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi8g1165 Myb_DNA-bind_4 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1165 - - vvi:100256247 1103.2