Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1164 ATGCATTATTCAAAGTACGCCACTAACTCCAACTCAAGCGGCAGCGGTGCCAGTGGCAGCAATGCCTCTGTCAATGGAGGTGGTGCTGCTTCCTCTGGTACCGGGCGCCACCCTGTTTACCGCGGAGTGAGGCGTAGGAGCAGCGGGAAATGGGTGTCGGAGATTCGGGAGCCCAAGAAGCCCAATCGCATTTGGCTTGGTACATTTCCAACTCCGGAAATGGCTGCAGTGGCTTATGATGTGGCTGCACTTGCTCTTAAGGGTCAAGATGCTGAGCTTAACTTTCCGAACTCCGCTTCTTCCTTGCCTGTTCCTGCATCCACCTCTCCACGTGACATCCAGGTGGCCGCAGCCTCGGCGGCCGCGGCCGCTGGAGCCGCTGTGGATGCTCTATCTGGGGGTGGAAGTACCATTAGTCCAATAGCACTAGGCAGATCAATGGCTAATGAGTTTGTTGACGAGGATTTGATCTTCGATATGCCCAATCTTCTTGTGAATATGGCAGAAGGGATGCTTCTCAGCCCTCCTCGCTTGGATTTGGCAGGGGAAGATGCCACCGCGGATTTTACAGGAGATCACAGCCTCTGGAATTATCCTTAA 600 0.5417 MHYSKYATNSNSSGSGASGSNASVNGGGAASSGTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASTSPRDIQVAAASAAAAAGAAVDALSGGGSTISPIALGRSMANEFVDEDLIFDMPNLLVNMAEGMLLSPPRLDLAGEDATADFTGDHSLWNYP* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1164 199 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Vvi8g1164 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 29 198 IPR045277 GO:0003700
Vvi8g1164 199 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vvi8g1164 199 MobiDBLite consensus disorder prediction 1 52 - -
Vvi8g1164 199 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vvi8g1164 199 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Vvi8g1164 199 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700|GO:0006355
Vvi8g1164 199 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vvi8g1164 199 MobiDBLite consensus disorder prediction 1 30 - -
Vvi8g1164 199 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Vvi8g1164 199 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Vvi8g1164 199 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1164 Vvi-Chr8 17783407 17784006 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1164 28 199 AP2-EREBP Transcription Factor Family AT2G36450 63.736 3.19e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi8g1164 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1164 - - vvi:100261339 342.813