Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1162 ATGAACCCATTTGAACGCCAAGTTACCAGCTCTTTCTCTGTAGAGTCTTCGTCGTCATCATCATTTTCATCCTCAACACGTGCACCAGGTAGTTCGTCGCAAACCCATGAAGCAGGAAGCAGCAGCCAGAAGCGCAAAGCCGGGAGGAAGAAGTTCAAGGAGACCCGACACCCATTGTACAAAGGCGTTCGACAAAGGAACGGCAAGTGGGTGTGCGAACTGCGGCAGCCTCGCAAAAGGAATCGAATATGGCTGGGGACTTTCCCTTGCCCGGACATGGCTGCTAGGGCATATGATGTAGCTGCTTTGGCTATTAAGGGAGACTCTGCTTCCCTCAATTTCCCTGAATCCGTGAGTCAGTTGCCTCGTGCAGCGTCATCTTCTATAGAGGACATACGATCTGCAGCTCTAAAAGCTGCTCAAACATTTGAAGCTACGGAGAAGGAGAAGGAGAAAGAAAGGGAAGACGAAGATTCAGACCCTTGCCAACTATTTGTGGATGAGGAGGCTTTGTTTAATATGCCGACTCTACTGGACAGCATGGCGGAAGGCTTGATCCTTACGCCGCTGGCACTGAAGAAAGGGTTCAATTGGAACAGCATTAAAGAGGCGGAAGACTTCACTCTCTGGACTGACTAA 639 0.4992 MNPFERQVTSSFSVESSSSSSFSSSTRAPGSSSQTHEAGSSSQKRKAGRKKFKETRHPLYKGVRQRNGKWVCELRQPRKRNRIWLGTFPCPDMAARAYDVAALAIKGDSASLNFPESVSQLPRAASSSIEDIRSAALKAAQTFEATEKEKEKEREDEDSDPCQLFVDEEALFNMPTLLDSMAEGLILTPLALKKGFNWNSIKEAEDFTLWTD* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1162 212 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677
Vvi8g1162 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 211 IPR045277 GO:0003700
Vvi8g1162 212 CDD AP2 58 117 IPR001471 GO:0003700|GO:0006355
Vvi8g1162 212 MobiDBLite consensus disorder prediction 1 59 - -
Vvi8g1162 212 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Vvi8g1162 212 ProSiteProfiles AP2/ERF domain profile. 59 115 IPR001471 GO:0003700|GO:0006355
Vvi8g1162 212 FunFam Ethylene-responsive transcription factor 2 58 116 - -
Vvi8g1162 212 SMART rav1_2 59 121 IPR001471 GO:0003700|GO:0006355
Vvi8g1162 212 MobiDBLite consensus disorder prediction 1 41 - -
Vvi8g1162 212 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vvi8g1162 212 PRINTS Ethylene responsive element binding protein signature 97 117 IPR001471 GO:0003700|GO:0006355
Vvi8g1162 212 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1162 Vvi-Chr8 17765904 17766542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1162 1 211 AP2-EREBP Transcription Factor Family AT5G51990 43.231 2.83e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi8g1162 AP2 8.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1162 - - vvi:100266546 369.392