Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1159 ATGTCCATGGATTTCCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAAGAAGCACCTTCTGGAAAGATGCCTAGACTTCTCCTTGATCAACAACCATCTGGGTCTGCTCTTCCATTGTTTGTACCTGAACCCAACAGCAAGATCAGCAACCTGTCAGCATTTCCAGATTCAACAACAACTGCTACCAGATTTTCCAAAACTGGAGGAAGTTACTTCAGCTTGGCCCAGTGGCAGGAACTTGAGCTGCAGGCTTTGATCTTCAGGCACATGTTAGCTGGTGCTGCTGTGCCTCCTGAACTCCTTCAGCTAATCAAGAAAAGCCTTCTTAACCATCCTCCATACTACCTCCAGCACCCTCTTCAACATTACCAGCATTATCAGCCTGCTTTGTTGCAATCAGGGTACTGGGGAAGAGCTGCAATGGATCCGGAGCCCGGGCGTTGCCGAAGAACAGACGGTAAAAAATGGAGGTGCTCAAGGGACGTGGTAACTGGTCAGAAGTACTGCGAGCGCCACATGCACCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAAATCCCCACACCCGCTGCCGCGGGTGGTGGTGGTGGTGCTGCTGTTGCTTCTGTTGGGGCCCTCAAATCCACTACTGCTGCCATCGCTGCTCAGCCCTTAACGACCGTAGCTGGTGGGACTCATTTCGCACTTTCCGGGCCACCGCCTTCCATTGATCTGTTGCACCTCAATCGGAGCCCCCCAGAACCAAAAACTGAAAACAAGGGTCTTTTTGAGCATCGAACTGAGAATGTTTCTGGGGATGGTAGATCTGATGGACGAGTCCTACGGCATTTTTTTGACGATTGGCCAAGATCAATCCAAGAACCTGACAATGCCGCCAATGGAAGCAATAACAGCCAGGCAACCTCTTCCACATACCTCTCCATGTCCATTCTTGGGCACCACTCATCCGACGTGTCGTTGAAACTGTCCACTGGTAACGGAGATGAGCAAAGCCCCCAAGATGTAAATGCTGAGAGGGAGAGGCCCCAACTAAATTGGGCTGCAGGTTGGGGGACACACCAGTCGGCCCAAATGGGGGGACCCCTTGCTGAGGCGCTGAGGTCCGCAACATCCAATTCATCACCAACCAGCGTTCTACATCAGTTGCCTCGGGGCACAGCCTCAGATACTAGCTATGAGGGAGATTGTGTCCCAATGGGGAAGGAATTGAATAGAATGCAAAATTTATTAACCATTTTTTAG 1245 0.5108 MSMDFHLKQWRNQHESEEAPSGKMPRLLLDQQPSGSALPLFVPEPNSKISNLSAFPDSTTTATRFSKTGGSYFSLAQWQELELQALIFRHMLAGAAVPPELLQLIKKSLLNHPPYYLQHPLQHYQHYQPALLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVEIPTPAAAGGGGGAAVASVGALKSTTAAIAAQPLTTVAGGTHFALSGPPPSIDLLHLNRSPPEPKTENKGLFEHRTENVSGDGRSDGRVLRHFFDDWPRSIQEPDNAANGSNNSQATSSTYLSMSILGHHSSDVSLKLSTGNGDEQSPQDVNAERERPQLNWAAGWGTHQSAQMGGPLAEALRSATSNSSPTSVLHQLPRGTASDTSYEGDCVPMGKELNRMQNLLTIF* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1159 414 MobiDBLite consensus disorder prediction 319 333 - -
Vvi8g1159 414 MobiDBLite consensus disorder prediction 245 273 - -
Vvi8g1159 414 MobiDBLite consensus disorder prediction 243 273 - -
Vvi8g1159 414 MobiDBLite consensus disorder prediction 368 389 - -
Vvi8g1159 414 PANTHER GROWTH-REGULATING FACTOR 5 39 318 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi8g1159 414 Pfam QLQ 73 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi8g1159 414 MobiDBLite consensus disorder prediction 319 339 - -
Vvi8g1159 414 MobiDBLite consensus disorder prediction 368 393 - -
Vvi8g1159 414 SMART QLQ_2 71 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi8g1159 414 Pfam WRC 144 186 IPR014977 -
Vvi8g1159 414 ProSiteProfiles QLQ domain profile. 72 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi8g1159 414 MobiDBLite consensus disorder prediction 1 25 - -
Vvi8g1159 414 ProSiteProfiles WRC domain profile. 143 187 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1159 Vvi-Chr8 17725858 17728414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1159 3 383 GRF Transcription Factor Family AT3G52910 47.368 2.40e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi8g1159 WRC 5.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1159 - - vvi:100249368 765.377