Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1157 ATGGGAAAAAGCTTGAAAATGTTGTTCCATCTTCCGAGTTTCATGACACTAGTGGCCAAAAATGTAACGGCAAGAGGGTTGGACATCAATGATGTGCAGTTAATCATCCAGTGTGAGCCTCCTCGAGATGTCGAAGCTTACACCCATCAATCTGGACGCACAGGAAGAGCAGACAATGCTAGGGTTGCTGTAATGCTTTTGATCCAAGAAGGTCCAATATCTCTAAGATAG 231 0.4416 MGKSLKMLFHLPSFMTLVAKNVTARGLDINDVQLIIQCEPPRDVEAYTHQSGRTGRADNARVAVMLLIQEGPISLR* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1157 76 PANTHER RNA HELICASE 16 69 - -
Vvi8g1157 76 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 68 IPR027417 -
Vvi8g1157 76 Pfam Helicase conserved C-terminal domain 14 57 IPR001650 -
Vvi8g1157 76 Gene3D - 8 72 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1157 Vvi-Chr8 17677703 17677933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1157 9 70 Eukaryotic Initiation Factors Gene Family AT1G72730 33.871 1.51e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1157 K16911 - pvy:116116344 94.3597