LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g1148	ATGGGAGACCTTCCTAAAACTGGAGCTGTCACCGCCGCAGACCACCACAGCCTGCTTTCGGCAGTTGTCGGAAGTGACAGAATGGCCAGAGACTCCACAATCCACAGTTATGGAAGGAGCTTCAATGGTTTTGCAGCGAGGTTGTTACCACATGAAGCAAAGATTCTCTCTGAGAAAGAGGGTGTTGTATCGGTGTTTCCAAACACTATGCGCAAACTTCACACGACAAGATCATGGGATTTCTTAGGAATGCGTGAAAAGATGAAGAAAAGGAACCCCAAAGCAGAGATCAATATGGTCATTGGTTTGCTAGATACAGGAATTTGGATGGACTGCCCCAGTTTCAAAGATAAAGGATATGGGCCCCCCCCAACCAAGTGGAAGGGCAAATGTAGCAACTCCTCAGGCTTCACTGGATGTAACAACAAGGTCATCGGTGCAAAGTACTATGATCTGGACCACCAACCCGGTATGTTGGGTAAAGATGACATACTATCACCGGTCGACACGGATGGGCATGGCACACACACGGCCTCCACAGCTGCTGGAATAGTAGTAAAAAATGCCAGCTTGTTTGGCGTAGGTAAAGGGACAGCCCGAGGAGGGGTGCCATTAGCACGTATCGCCATGTATAAAGTATGTTGGTATACTGGCTGCTCTGACATGAATCTCCTAGCGGGGTTTGATGATGCCATTGCGGATGGGGTTGATGTGTTATCGGTGTCCATTGGGGGAACTGTTGGACCATTTTTTGAAGACCCCATAGCCATTGGAGCTTTTCATGCCATGAGAAGGGGAGTCCTCGTATCTAGCTCGGCTGGGAATGATGGGCCTTTGGAAGCAACCGTCCAGAACGTTGCGCCCTGGATACTGACTGTAGGTGCTACTGGTCTTGACAGGGAGTTCCGGAGTCAAGTCAAGTTGGGCAATGGCATGAAAGCTTCTGGAGTTTCAGTGAACACATTTTCACCAAGGAAAAAAATGTACCCTCTAACTAGTGGAACCTTAGCATCCAATTCCAGTGGAGCATACTGGGGAAATGTCAGTGCTTGTGACTGGGCTAGTTTAATCCCAGAGGAGGTGAAGGGAAAGATTGTGTACTGCATGGGAAATAGAGGTCAAGATTTCAACATCAGGGACCTTGGTGGGATCGGCACAATCATGTCGCTTGATGAGCCAACAGACATTGGCTTTACCTTTGTCATCCCATCAACCTTTGTCACCAGCGAGGAAGGAAGAAAGATAGACAAATATATCAACTCTACCAAGTATGCTCAGGCAGTTATATACAAGTCAAAAGCTTTTAAAATAGCTGCCCCATTCGTGAGTTCTTTCTCATCTAGGGGACCCCAAGATCTCAGTCCCAACATCCTCAAGGTGAAAAAATCCTCTCCACTCTGCTCTTTCTCCTCTCTTCTCTCCTGTGTCCCTACTACTAATGAAAACTTCAATGAACAGCCTGATATTGTTGCACCGGGGCTGGACATATTAGCTGGTTACTCAAAGCTAGCACCTATATCAGGGGATCCAGAGGACAGGCGGTTTGCAAATTTCAACATTTTAACGGGAACATCTATGTCTTGCCCTCATGTAGCAGCTGCTGCTGCGTATGTTAAATCCTTCCACCCGAAATGGTCACCAGCTGCAATCAAGTCTGCACTCATGACCACAGCCACAACTCTGAAGATCAAGGACAATGCACTAGGATCAGGCTCCGGTCAATTAAACCCAAGAATCGCAGTGCACCCTGGCCTAGTCTACGACATCCCCACAAGTGGATACATCCGTTTCCTGTGCAAGGAAGGCTATAATAGCACAACCATCGGTCTACTCACAGGTGGAAAGCAGAAATACAAGTGCTCCAATTTCAGGCCTGCACTGGGATCAGATGGTCTCAACTATCCTTCCATGCATCTCCAAATTAAGGACCCAACGGCTAGATTCTCAGCAGTCTTCTATCGAACAGTAACCAGTGTAGGGCATGGAGCCTCTGTGTACAAGGCAACTGTGAAAGCAACCAAGGGTCTTTCAGTTAGAGTTGTTCCCAATACTTTGTCATTTCAAAAGGCGCATCAGCGGAGGTCTTTCAAGATTGTGTTGAAGGGAAAGCCTAACAACTCTCGGATTCAATCAGCATTTCTGGAATGGAGTGACTCTAAGCACAAAGTCAAGAGTCCTATCCTCGTTTACCGGCAGTCAATTTAG	2205	0.4735	MGDLPKTGAVTAADHHSLLSAVVGSDRMARDSTIHSYGRSFNGFAARLLPHEAKILSEKEGVVSVFPNTMRKLHTTRSWDFLGMREKMKKRNPKAEINMVIGLLDTGIWMDCPSFKDKGYGPPPTKWKGKCSNSSGFTGCNNKVIGAKYYDLDHQPGMLGKDDILSPVDTDGHGTHTASTAAGIVVKNASLFGVGKGTARGGVPLARIAMYKVCWYTGCSDMNLLAGFDDAIADGVDVLSVSIGGTVGPFFEDPIAIGAFHAMRRGVLVSSSAGNDGPLEATVQNVAPWILTVGATGLDREFRSQVKLGNGMKASGVSVNTFSPRKKMYPLTSGTLASNSSGAYWGNVSACDWASLIPEEVKGKIVYCMGNRGQDFNIRDLGGIGTIMSLDEPTDIGFTFVIPSTFVTSEEGRKIDKYINSTKYAQAVIYKSKAFKIAAPFVSSFSSRGPQDLSPNILKVKKSSPLCSFSSLLSCVPTTNENFNEQPDIVAPGLDILAGYSKLAPISGDPEDRRFANFNILTGTSMSCPHVAAAAAYVKSFHPKWSPAAIKSALMTTATTLKIKDNALGSGSGQLNPRIAVHPGLVYDIPTSGYIRFLCKEGYNSTTIGLLTGGKQKYKCSNFRPALGSDGLNYPSMHLQIKDPTARFSAVFYRTVTSVGHGASVYKATVKATKGLSVRVVPNTLSFQKAHQRRSFKIVLKGKPNNSRIQSAFLEWSDSKHKVKSPILVYRQSI*	735

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g1148	734	Pfam	Peptidase inhibitor I9	13	74	IPR010259	-
	Vvi8g1148	734	ProSitePatterns	Serine proteases, subtilase family, serine active site.	523	533	IPR023828	-
	Vvi8g1148	734	PRINTS	Subtilisin serine protease family (S8) signature	96	115	IPR015500	-
	Vvi8g1148	734	PRINTS	Subtilisin serine protease family (S8) signature	522	538	IPR015500	-
	Vvi8g1148	734	PRINTS	Subtilisin serine protease family (S8) signature	169	182	IPR015500	-
	Vvi8g1148	734	Pfam	Subtilase family	99	570	IPR000209	GO:0006508\|GO:0008236
	Vvi8g1148	734	Gene3D	-	299	435	-	-
	Vvi8g1148	734	Gene3D	Peptidase S8/S53 domain	98	594	IPR036852	GO:0004252\|GO:0006508
	Vvi8g1148	734	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	1	74	IPR037045	-
	Vvi8g1148	734	Pfam	Fibronectin type-III domain	632	729	IPR041469	-
	Vvi8g1148	734	SUPERFAMILY	Subtilisin-like	96	582	IPR036852	GO:0004252\|GO:0006508
	Vvi8g1148	734	CDD	Peptidases_S8_3	72	559	IPR034197	-
	Vvi8g1148	734	Gene3D	-	598	732	-	-
	Vvi8g1148	734	CDD	PA_subtilisin_like	306	429	-	-
	Vvi8g1148	734	ProSiteProfiles	Serine proteases, subtilase domain profile.	78	581	-	-
	Vvi8g1148	734	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	32	728	IPR045051	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g1148	Vvi-Chr8	17586740	17590525	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g1148	1	557	Subtilisin-like Serine Gene Family	AT5G03620	56.537	0.0	625

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g1148	-		-	vvi:100252726	1411.36