Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1143 ATGATGGGTTCATTTCCTGGTAGTTGTGAAATTGTTGAATCATCGGAAGACCCAAGTTTGGCTCAACTTTCTAGAGGAATTCATCGACCAAAATCTGGAGTAAAAGTGGATGACAAAGTTAGAAAGCCTCCTATACTGAAACTGGGACATGACAGTTCTCTAGAAGATGATCTTAATCGGATTTTTGAGGCAATTAACCTAAAAAATGCATCTAAGGTTTGGGGTCTTCCCCACCAAGTTGGAACAGACTCCCCATCGAAGAATGCGTTAAAAAAGCCAATTACAGTCAGTGGTTCTCATTCACCACGAATTGGGATTTCTGAGCCTGCAACTCTGAAGCAGGCACTAAGGGGACTCTGCATCTCCCAGGCATCTGAAATGGCTGCTGTGAAAAGGTTATCAAAGTCGGGAAGTTATTCAGGGGCGTCTGAAGCTGGAAGGATTAAGAGTTTGTTTAGTACTGTCGTTGTTGAAGCCAGACAACCTGGTATGTCTCTAGGCAAGGGTGGTATTGCAGAAATCTCTCTGTTTCCAGAAGAGAGCACATCAAATGCTTCTGAGAAGGTAACTCAGTACCTGCATGTTCCCAAGGTAAAGTCATCAAGCCAAAGTGCTCATTCTTCTCCCCGATTTGCCGTGGGTGCAACACAATTAGGAACAACAGCTAGATCACCACAAAGTGAGATTGTTCCTGTTTCAACAGAAATTAGTAATCAAACATCAAAGACAGTGCAGAAAGAAAAGCATACGTCTGTAACTGCTCTATCTGGTGCAAACACCGATGATAACATGCTGGAGCTAGGTACCACTGGTCATGCCTCAACCAAATCGGCAAACAGAGCATCAGCATTAAAGCCAGGGCGGAAAGGCAGGTTGCAAAATGTACCTTCTAGCTCGGTCAACAGTAGTAAGGCAAGCAAGTCAACAAAGAACACCCAACGTGTAGTCAAACCAATTCTCAGAAACAAGAATTTTGTAAAGAAAAAAGTAAAGCAGGATTCAAATTCTGCCACCTCCACTTCTAATACATGTAGTGAAGTTAACGATGAAATGGATCCAAGTACAAGTCAATTGGTTTGCCAGAGATGCCACTGTGCATTGAAGGATGCAAGGAAAGAACTGAGTCAAGATTCTCCCACATCCAACTTAAAAAGTCTCAGCACTGAAGCCAGCTTTAGTAATATGAACTCAGTTGCTAACAAACCAGGCATCAGTTCCAATAGTTATAACAGACATAAAGCTATTTTTGTCAAGGCAAACAAGAATGCAAAATCAAGGGAGAAAGGGGAATTGTCTCAGAGCTCTAAAAGTAGCCGTGGTGAGTACAGTAGCAGTACAAGCATCAGCGAAGAGAGCATTCTAAGTGGGTCTAGTTGTGGCAATAGACCTCACATGTCAAAGGATTTAAGATGGGAAGCCATCCGCCAAGTCCAGATGCAGCAAGGAGTTCTAGGATTGAGACACTTCAATCTGTTAAAAAAGCTTGGTGGTGGAGACATTGGGACTGTTTATCTGGCTGAGCTAATTGGTACATGCTGCCTTTTTGCTATAAAGGTCATGGACAATGACTTTTTGGCCAGAAGGAAAAAGATGCCAAGGGCCCAAACTGAAAGAGAAATATTGCGAATGCTGGATCATCCTTTTCTCCCTACGCTCTATGCTCAATTCACATCAGATAATTTGTCATGTTTGGTCATGGAATATTGTCCAGGTGGAGATCTGCATGTCCTTCGGCAGAAGCAGCCTGGTAGGAATTTTCCTGAACAAGCAGCAAGGTTTTATGTTGCTGAAGTCCTCCTTGCTTTGGAATACTTACACATGCTTGGAGTTGTATACCGAGATTTGAAACCAGAAAACATTCTAGTCAGAGAAGATGGTCACATTATGCTCACAGATTTTGATCTGTCACTCAGATGCAATGTAAATCCAACTCTTCTCAAATCATCTTCATCGACCATGGAGCCCACGAGGATGATGTCAGGTCCATGCAAAGAGTCTAGCTGCATTGACCCTTTATGTATTGAACCATCCTGTGAGGTCCCATGCTTCAGCCCCAGGTTTTTGCCTGCAGCTGCAAGAACACGGAAACTAAAATCTGAACTTGCAGCCCAGGTCAGATCATTACCACAGCTTGTGGCTGAGCCTACTGATGCTCGATCCAACTCCTTTGTGGGGACCCATGAATATTTGGCTCCAGAAATCATCAAAGGAGAGGGCCATGGGAGTGCGGTTGATTGGTGGACATTTGGAGTCTTTCTTTACGAGCTTCTATATGGAAAGACACCATTTAAAGGTTCTGGAAATGATGAAACATTGGCGAATGTGGTTTTGCAGAGCCTCAAATTTCCAGACAACCCAATCATTAGTTTTCAGGCAAGGGATCTCATCAGAGGGCTGTTGATGAAGGAGCCCGAGAATCGATTGGGGTCAGAGCGGGGGGCTGCAGAGATCAAGCAGCACCCGTTTTTTGAGGGCCTGAATTGGGCACTTATTCGCTGTACTATTCCTCCGGAGTTACCTGAGTTCGGTGAGTTTGGGCTCATGACAGTGGCTTCCCAGCAGAAGGAGAGCAAGTATCTGGAGTTTGAATTGTTCTAG 2598 0.4407 MMGSFPGSCEIVESSEDPSLAQLSRGIHRPKSGVKVDDKVRKPPILKLGHDSSLEDDLNRIFEAINLKNASKVWGLPHQVGTDSPSKNALKKPITVSGSHSPRIGISEPATLKQALRGLCISQASEMAAVKRLSKSGSYSGASEAGRIKSLFSTVVVEARQPGMSLGKGGIAEISLFPEESTSNASEKVTQYLHVPKVKSSSQSAHSSPRFAVGATQLGTTARSPQSEIVPVSTEISNQTSKTVQKEKHTSVTALSGANTDDNMLELGTTGHASTKSANRASALKPGRKGRLQNVPSSSVNSSKASKSTKNTQRVVKPILRNKNFVKKKVKQDSNSATSTSNTCSEVNDEMDPSTSQLVCQRCHCALKDARKELSQDSPTSNLKSLSTEASFSNMNSVANKPGISSNSYNRHKAIFVKANKNAKSREKGELSQSSKSSRGEYSSSTSISEESILSGSSCGNRPHMSKDLRWEAIRQVQMQQGVLGLRHFNLLKKLGGGDIGTVYLAELIGTCCLFAIKVMDNDFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQPGRNFPEQAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCNVNPTLLKSSSSTMEPTRMMSGPCKESSCIDPLCIEPSCEVPCFSPRFLPAAARTRKLKSELAAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLYGKTPFKGSGNDETLANVVLQSLKFPDNPIISFQARDLIRGLLMKEPENRLGSERGAAEIKQHPFFEGLNWALIRCTIPPELPEFGEFGLMTVASQQKESKYLEFELF* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1143 865 MobiDBLite consensus disorder prediction 78 102 - -
Vvi8g1143 865 CDD STKc_phototropin_like 487 841 - -
Vvi8g1143 865 SUPERFAMILY Protein kinase-like (PK-like) 464 840 IPR011009 -
Vvi8g1143 865 MobiDBLite consensus disorder prediction 218 351 - -
Vvi8g1143 865 FunFam serine/threonine-protein kinase D6PK-like 573 640 - -
Vvi8g1143 865 Gene3D Phosphorylase Kinase; domain 1 489 572 - -
Vvi8g1143 865 MobiDBLite consensus disorder prediction 218 281 - -
Vvi8g1143 865 MobiDBLite consensus disorder prediction 435 461 - -
Vvi8g1143 865 PANTHER FLIPPASE KINASE 1-RELATED 304 842 - -
Vvi8g1143 865 ProSiteProfiles Protein kinase domain profile. 489 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1143 865 FunFam serine/threonine-protein kinase D6PK-like 718 841 - -
Vvi8g1143 865 MobiDBLite consensus disorder prediction 292 318 - -
Vvi8g1143 865 MobiDBLite consensus disorder prediction 331 351 - -
Vvi8g1143 865 SMART serkin_6 489 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1143 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Vvi8g1143 865 Gene3D Transferase(Phosphotransferase) domain 1 573 834 - -
Vvi8g1143 865 MobiDBLite consensus disorder prediction 81 102 - -
Vvi8g1143 865 FunFam Serine/threonine-protein kinase D6PK-like 487 572 - -
Vvi8g1143 865 MobiDBLite consensus disorder prediction 420 434 - -
Vvi8g1143 865 MobiDBLite consensus disorder prediction 419 461 - -
Vvi8g1143 865 Pfam Protein kinase domain 720 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1143 865 Pfam Protein kinase domain 490 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1143 Vvi-Chr8 17534972 17540461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1143 2 865 AGC Kinase Gene Family AT2G36350 51.515 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi8g1143 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1143 - K08286 vvi:100246067 1638.24