Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1135 ATGGCGGAAGAACACAGATGCGAAGCTCCCGAAGGCCACCGCCTTTGCGCCAACAACTGCGGTTTTTTCGGAAGTCCAGCGACCCTAAACCTTTGCTCTAAATGTTACAGAGACCTCCGTCTCAAAGAAGAACAAGCCTCCTCTGCCAAATCCGCGGTGGAGAAATCGCTTTCAGCCGCCTCCTCTTCCACAGCTCCTCTCTCCCCACCCGCTTTAACCTTACCGGAAGCGGCCAATGAAATCACTGTTCCGGCGGCTGTGACCGCCGCTGTACCGTCACCTTCGGCGACACAGCCGAACAGGTGCTCCACCTGTCGGAAAAGGGTGGGATTGACCGGGTTCCGGTGCAGGTGTGGGATCACGTTCTGTGGGGTCCACCGGTACCCGGAACAGCACGGGTGCACCTTTGACTTCAAGACGCTTGGCAAAGAGGCCATCTCTAAGGCCAATCCTGTTGTAAAAGCTGAGAAGTTGCACAAGATATGA 486 0.5597 MAEEHRCEAPEGHRLCANNCGFFGSPATLNLCSKCYRDLRLKEEQASSAKSAVEKSLSAASSSTAPLSPPALTLPEAANEITVPAAVTAAVPSPSATQPNRCSTCRKRVGLTGFRCRCGITFCGVHRYPEQHGCTFDFKTLGKEAISKANPVVKAEKLHKI* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1135 161 Gene3D - 77 157 IPR035896 -
Vvi8g1135 161 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 161 - -
Vvi8g1135 161 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vvi8g1135 161 Pfam AN1-like Zinc finger 102 138 IPR000058 GO:0008270
Vvi8g1135 161 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Vvi8g1135 161 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vvi8g1135 161 ProSiteProfiles Zinc finger AN1-type profile. 96 142 IPR000058 GO:0008270
Vvi8g1135 161 Gene3D - 1 64 - -
Vvi8g1135 161 FunFam Zinc finger AN1-type containing 6 77 157 - -
Vvi8g1135 161 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 62 - -
Vvi8g1135 161 SMART AN1_Zf_4 102 139 IPR000058 GO:0008270
Vvi8g1135 161 SUPERFAMILY AN1-like Zinc finger 92 156 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1135 Vvi-Chr8 17461642 17462127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1135 1 161 C2H2 Transcription Factor Family AT3G52800 50.857 6.58e-54 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1135 - - vvi:100264822 287.345