Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1125 ATGGTGGGTTCGGAGTCGGAGACTTTATCCCAAAGCGAGGTGGAGTCGGGGTTACAGGAAGATCAACAGCCCAAGAACCATGGGATGCCATCTCTGGGAAGACAGTCCTCAATCTACTCCCTCACCCTGGATGAGTTTCAGCACACCCTCTGCGAGAATGGGAAGAATTTCGGGTCCATGAACATGGATGAGTTTCTCACTAGCATATGGACTGCAGAGGAAAACCAAGCCACCAATTTTAACCACATTAGCAACTCCCAGATGTCGCTCAGTGAAACTTCCATGGAGAAACCCATTGCTAAGCAGCCGAGCTTGGCCCGCCAGGGCTCTCTAAGTCTTCCTGCGCCGTTTTGTCAAAAGACTGTGGATGAGGTCTGGTCTGAAATCCATAAAGCTCAGCAACAACAGCAGCAGGACAGCGTTCATAATGCTGAGTCTGCCCATCGCCAACCTACTTTAGGAGAGATGACTTTGGAGGATTTCTTGATCAGGGCAGGGGTAGTTCGGGAACAGCCTACAGCAACCGCTCCGGCGCAGCATCAGCAGCAACATCAGTACGGGTTGTACCAAAATAACAACACCATCAGTCCAACTTTTGCTAGACCTGTTATGGGAATGGGTGGTGGTGCCGGTGTTGGGAGTTTTCAAACTTTGCCCCAAAGCAGTGGGGCTGCCGGAGAGTCCTCTGGCTATGCCGGGAATGGTAAAAGGAACGGCGGCTACCCGAAGACTTCAGCTTGTCTTGGAGGTAGAGTGGGGAACGGCGGTGGTGTGTACGGGCCTGGGCAGACGTTGGCAATGGAGTCGACCGTAAGTCCAGTGTCTTCCGATGGGATGTGCCCGAATCAAATCGACAACACTGCAGGTCAGTTCGGTTTGGACGTGGGTGGCCTGAGAGGAAGGAAGAGGATCATAGATGGCCCGGTGGAGAAGGTGGTGGAACGGAGACAACGAAGGATGATCAAGAATAGAGAGTCTGCGGCGAGATCTCGAGCTAGAAAACAGGCTTACACAGTTGAACTGGAAGCAGAATTAAACCAGTTAAAGGAAGAGAACACCCTTCTTCAACAGGCTCTGGCAGACTTTGAGAGGAAAAGAAAGCAACAGTATTTAGAAGAACTGAAAATGAAAACTCAGACCAAGGCAGAAAAAGCTAAAGAAAAACTGAAGAAGATGAGGAAGACTTGGAGCTGCCCATTGTGA 1203 0.5071 MVGSESETLSQSEVESGLQEDQQPKNHGMPSLGRQSSIYSLTLDEFQHTLCENGKNFGSMNMDEFLTSIWTAEENQATNFNHISNSQMSLSETSMEKPIAKQPSLARQGSLSLPAPFCQKTVDEVWSEIHKAQQQQQQDSVHNAESAHRQPTLGEMTLEDFLIRAGVVREQPTATAPAQHQQQHQYGLYQNNNTISPTFARPVMGMGGGAGVGSFQTLPQSSGAAGESSGYAGNGKRNGGYPKTSACLGGRVGNGGGVYGPGQTLAMESTVSPVSSDGMCPNQIDNTAGQFGLDVGGLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENTLLQQALADFERKRKQQYLEELKMKTQTKAEKAKEKLKKMRKTWSCPL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1125 400 MobiDBLite consensus disorder prediction 218 237 - -
Vvi8g1125 400 Coils Coil 375 395 - -
Vvi8g1125 400 Coils Coil 331 368 - -
Vvi8g1125 400 MobiDBLite consensus disorder prediction 1 34 - -
Vvi8g1125 400 MobiDBLite consensus disorder prediction 133 147 - -
Vvi8g1125 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 313 365 IPR004827 GO:0003700|GO:0006355
Vvi8g1125 400 SUPERFAMILY Leucine zipper domain 315 360 IPR046347 GO:0003700|GO:0006355
Vvi8g1125 400 MobiDBLite consensus disorder prediction 133 155 - -
Vvi8g1125 400 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 318 333 IPR004827 GO:0003700|GO:0006355
Vvi8g1125 400 CDD bZIP_plant_BZIP46 315 369 - -
Vvi8g1125 400 Gene3D - 313 364 - -
Vvi8g1125 400 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 33 399 IPR043452 GO:0003700|GO:0045893
Vvi8g1125 400 SMART brlzneu 311 375 IPR004827 GO:0003700|GO:0006355
Vvi8g1125 400 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 313 369 - -
Vvi8g1125 400 Pfam bZIP transcription factor 315 359 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1125 Vvi-Chr8 17372100 17378057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1125 1 369 bZIP Transcription Factor Family AT2G36270 48.394 2.06e-108 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi8g1125 bZIP_1 5.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1125 K14432 - vvi:100247734 717.227