Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1117 ATGTCGGGTGCAATGTACAAAAAATTAAAACTGAAAGGACCCAGAAGTAAAAGCCTTGGCACGTGTCTAGGGTTTTATATCTCACAACATCTTCCTCCTTTATCTCTCTTCTCGGCTGCAGTCGCCAAACCCGTTCTAGGGTTTTCTTCTCCTAGGTATGTTTACTCTCCCCTTCTACTTTCTGGGAGTTATCAAACTGTAGAGAAACAGAAAGCAGTAGCCATGAGCAAGCTTCAGAGTGAGGCATTGAGAGAGGCCATCACCCAGATTGTTGGAGATGCAAAGGAGAAAAAGCGTAACTTCATTGAGACCATTGAACTCCAAATTGGACTGAAGAACTATGATCCCCAAAAGGACAAGCGTTTTAGTGGGTCTGTGAAGCTGCCACACATCCCTCGTCCTAAGATGAAGATCTGCATGCTTGGTGATGCTCAGCATGTGGAAGAGGCAGAGAAGATAGGATTAGAGTACATGGATGTGGAAGGGCTGAAAAAGCTCAATAAGAACAAGAAACTGGTCAAGAAGCTTGCCAAGAAGTACCATGCTTTTCTTGCATCTGAAGCTGTCATCAAGCAGATCCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGGGAAGTTTCCAACACTGGTGACTCATCAGGAATCCCTTGAGTCAAAAGTTAATGAAACAAAAGCAATGGTGAAGTTCCAACTTAAGAAGGTTCTCTGCATGGGTGTTGCTGTGGGCAACTGCAGCATGGAGGAGAAGCAGATCTTCCAGAATGTGCAACTTAGTGTCAACTTCCTTGTCTCATTATTGAAGAAAAATTGGCAAAATGTGAGGTGCCTGTACCTGAAGAGTACCATGGGGAAATCCAATCGCATCTTTTAG 873 0.4444 MSGAMYKKLKLKGPRSKSLGTCLGFYISQHLPPLSLFSAAVAKPVLGFSSPRYVYSPLLLSGSYQTVEKQKAVAMSKLQSEALREAITQIVGDAKEKKRNFIETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSNRIF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1117 290 ProSitePatterns Ribosomal protein L1 signature. 190 209 IPR023673 -
Vvi8g1117 290 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 85 284 - -
Vvi8g1117 290 SUPERFAMILY Ribosomal protein L1 95 290 IPR023674 -
Vvi8g1117 290 Pfam Ribosomal protein L1p/L10e family 95 284 IPR028364 -
Vvi8g1117 290 CDD Ribosomal_L1 83 289 IPR028364 -
Vvi8g1117 290 FunFam Ribosomal protein L10a 75 193 - -
Vvi8g1117 290 Gene3D - 139 228 IPR016095 -
Vvi8g1117 290 FunFam Ribosomal protein 139 228 - -
Vvi8g1117 290 FunFam Ribosomal protein 211 288 - -
Vvi8g1117 290 Gene3D - 94 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1117 Vvi-Chr8 17307393 17311533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1117 75 290 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 91.204 5.85e-131 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1117 K02865 - vvi:100266487 405.986