Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1115 ATGCATGTTTGTCGGGCGAAAAGTAAGGTTTCTCTGGAAAGTATGCAGAACAATAACTCATCCGGCAATGACCAAAAGTTTCAAGTTCGAAAACTGGAGGTCTCAGATAAAAGCAAAGGTTTCATAGAGCTACTGCAGCAACTAAGTGAATGTGATTCTGTCTCTGACAAGGAATTTGAGGAACGATTTCAAGAGCTCAGCTCCCTTGGTGATGATCATGTTATATGTGTAATTGAAGATGATCAACTTGGAAAGATCATTGCAACTGGAAGCGTTTTCATTGAAAAGAAGTTTATACGGAATTGTGGAAAAGTTGGACATATCGAAGATATTGTGGTTGATTCCAATGCCCGTGGCTTGCAATTAGGGAAGAAAATCCTTGGGTTTCTTACAGAGCATGCACGATCGAAGGGTTGTTATAAGGTGATTCTGGATTGTAGTGCTGAGAACAAAGGATTTTATGAGAAATGTGGCTTCAAACAGAAGGAAATTCAAATGGTGAAATACTTCATTTGA 516 0.3895 MHVCRAKSKVSLESMQNNNSSGNDQKFQVRKLEVSDKSKGFIELLQQLSECDSVSDKEFEERFQELSSLGDDHVICVIEDDQLGKIIATGSVFIEKKFIRNCGKVGHIEDIVVDSNARGLQLGKKILGFLTEHARSKGCYKVILDCSAENKGFYEKCGFKQKEIQMVKYFI* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1115 171 PANTHER GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE 22 166 IPR039143 GO:0004343|GO:0006048
Vvi8g1115 171 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 32 171 IPR000182 GO:0016747
Vvi8g1115 171 CDD NAT_SF 77 145 - -
Vvi8g1115 171 MobiDBLite consensus disorder prediction 5 26 - -
Vvi8g1115 171 FunFam Glucosamine 6-phosphate N-acetyltransferase 11 167 - -
Vvi8g1115 171 Pfam Acetyltransferase (GNAT) family 53 159 IPR000182 GO:0016747
Vvi8g1115 171 MobiDBLite consensus disorder prediction 10 26 - -
Vvi8g1115 171 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 26 170 IPR016181 -
Vvi8g1115 171 Gene3D - 8 167 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vvi8g1115 Acetyltransf_1 5e-17 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1115 K00621 - vvi:100249529 334.339