Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1103 ATGCCAAGGACAAGAGCAAGTGCTGCAGCTGCAGCACAGAATCCAAATGTATCTGAGAACCCCATTGAATGTGAAAAGCCTGCGGAACCTGAAGAGCGTGTGGACCTTGATGGAGACAATGAGGATACAAAGGAGGAAGAGGTTGAGTCTGAAGAAGTAGAGGAAGAAGTGGAAGAGATAGAGGAAGAGGAGGAAGAAGAAGTAGAAGAAGAGGTGGAAGAAGATGAAGAGGAGGAAGATACCTACTTTGCTGATGCACAAAAAGATCCAGATGGTGACGATGAGATAAAATCTGCCAAAGGAGAAGTAGACAATGAAAATAGAAGGCATGCAGAACTACTAGCACTTCCTCCTCATGGGTCAGAGGTCTACCTTGGTGGCATTCCAAATAATGCTTCTGAAGAGGATTTGAGGGGCTTTTGTGAACCTGTAGGAGAAGTTACAGAGGTGAGAATTTTAAAGGGAAAAGATTCTGCTGAAACCAAGGGCTATGCTTTTGTGACATTCAGAACCAAGGAATTGGCTTCTAAGGCAATGGAGGAGCTGAATAATGCCGAAATAAAGGGAAGAAAGATAAAGTGTTCAGCATCTCAAGTAAAGCATCGATTGTTCATTAGTAATGTCCCCAGAACCTGGGAAGAGGAAGATATGAAGAAGGTTGTAACAGAGATTGGACCTGGAGTTAATTTGGTGGACCTTTGGAAGGACCCACAGAACTCCAGCCGGAACCGTGGATTTGCTTTCATCGAATATTATAATCATGCATGTGCAGAATACTCAAGAAAAAAGATGTCAAATCCTAAATTTAAGCTTGACAATAATGCTTCAACTGTGAGTTGGGCTGACCCTAAAAACGTGGAGTCTTCTGCTGCTTCACAGGTAAAGGCAGTATACATCAAGAATTTACCAAAGTACATGACTCAAGATCAGTTAAGGGAGTTGTTTGGACAACATGGAAAGATCACAAAAGTAGTTATTCCTCCTGCAAAGGCTGGACAGGAAAACTGCAGATTTGGTTTTGTTCACTTTGCTGAAAGGTCCAGTGCCATGAAGGCACTAAAGAACACTGAAAAATACGAAATTGATGGTCACATTTTAGGGTGTTCTCTTGCGAAACCACAGGCAGATAAGAAGTTTTCTGGTGGATCAAATTCACAGAAGTCAGCCTTACTTCCAAGCTACCCTCCTTGGGTTGGTTATGGTTTGCTTGGTGGTGCTCCAGGTGCAGGATATGGTGCTGCAGGCTTTGGACAACCACTGACCTATGGTAGGGGACTGACTTCTGCTGGCACAGCCATGATGCCAATGCTTTTGCCTGATGGAAGGATTGGATATGTCCTGCAGCAGCCTGGAATGCAGCCATACACCCCTCCATCACAGCCTAGGAGTGACAGGAGTGGAGGCGGCAGCACTAGTGGGGGAAGGCATAGTGGTGACAGAGGCTATGGCCGCAGATGGTATAATCCATATTGA 1473 0.4474 MPRTRASAAAAAQNPNVSENPIECEKPAEPEERVDLDGDNEDTKEEEVESEEVEEEVEEIEEEEEEEVEEEVEEDEEEEDTYFADAQKDPDGDDEIKSAKGEVDNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKGYAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADPKNVESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLPSYPPWVGYGLLGGAPGAGYGAAGFGQPLTYGRGLTSAGTAMMPMLLPDGRIGYVLQQPGMQPYTPPSQPRSDRSGGGSTSGGRHSGDRGYGRRWYNPY* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1103 490 CDD RRM_SF 123 195 - -
Vvi8g1103 490 MobiDBLite consensus disorder prediction 85 106 - -
Vvi8g1103 490 SMART rrm1_1 202 279 IPR000504 GO:0003723
Vvi8g1103 490 SMART rrm1_1 296 369 IPR000504 GO:0003723
Vvi8g1103 490 SMART rrm1_1 122 195 IPR000504 GO:0003723
Vvi8g1103 490 MobiDBLite consensus disorder prediction 1 106 - -
Vvi8g1103 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 193 IPR000504 GO:0003723
Vvi8g1103 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 269 IPR000504 GO:0003723
Vvi8g1103 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
Vvi8g1103 490 SUPERFAMILY RNA-binding domain, RBD 118 287 IPR035979 GO:0003676
Vvi8g1103 490 SMART rrm2_1 296 369 IPR003954 GO:0003676
Vvi8g1103 490 SMART rrm2_1 122 195 IPR003954 GO:0003676
Vvi8g1103 490 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 202 282 - -
Vvi8g1103 490 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 484 - -
Vvi8g1103 490 Gene3D - 284 390 IPR012677 -
Vvi8g1103 490 Coils Coil 96 116 - -
Vvi8g1103 490 MobiDBLite consensus disorder prediction 458 473 - -
Vvi8g1103 490 SUPERFAMILY RNA-binding domain, RBD 290 385 IPR035979 GO:0003676
Vvi8g1103 490 Gene3D - 202 282 IPR012677 -
Vvi8g1103 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Vvi8g1103 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Vvi8g1103 490 MobiDBLite consensus disorder prediction 447 490 - -
Vvi8g1103 490 MobiDBLite consensus disorder prediction 34 84 - -
Vvi8g1103 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 283 IPR000504 GO:0003723
Vvi8g1103 490 Coils Coil 36 81 - -
Vvi8g1103 490 Gene3D - 32 201 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1103 Vvi-Chr8 17205005 17208929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1103 158 454 Eukaryotic Initiation Factors Gene Family AT4G34110 25.532 8.08e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1103 K13161 - vvi:100259599 878.626