Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1102 ATGGATACATCAAACCCTGCAGTTTTTGTCAATATGGAGCTGCTGCGCATGTATGTGGGAAGAAAGGTTCGAGCAGTGATTCAGGTTATACGATCTGAAGGTGGAGTCATAATTGGAAAATCTACAGATGAACAACAGCTGGTCATAAAAGGAACCCCACCATCCTTTCCTCTAACAACTTTTGTTGAGGTAATTGGTATTGCAGACAGTAACCAATCCATCCGGGCTGAAATATGGACCAACTTTGGTGACACATTTGACACGTATGCATACAATCAGCTTTGCCAACTTGCAAATGGGGAATATAAACACTTGTTTCTCTGA 324 0.4167 MDTSNPAVFVNMELLRMYVGRKVRAVIQVIRSEGGVIIGKSTDEQQLVIKGTPPSFPLTTFVEVIGIADSNQSIRAEIWTNFGDTFDTYAYNQLCQLANGEYKHLFL* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1102 107 Gene3D - 1 107 IPR012340 -
Vvi8g1102 107 CDD RPA3 6 99 - -
Vvi8g1102 107 Pfam Replication factor A protein 3 1 101 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi8g1102 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Vvi8g1102 107 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1102 Vvi-Chr8 17200938 17201882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1102 1 107 Core DNA Replication Machinery Family AT4G18590 67.290 6.47e-53 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1102 K10740 - vvi:100264936 216.468