Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1101 ATGGCCACGATACAATTCACCATCGCTCCTCCATCTTCTTCCCCTTCTCTTCTTGGTCTTAGATTCAAACCCAGACCAACCAAACTCTTCGCCTTCTCACCAAATCTAACAGTTAAACCCTCTTTTAAAGCCTCCCTGAAGCCCTTTAACTTCATTTCTCCCTCCACATTTCACTCTCTCGAAGCCATCAAACCCTACGTTCTATCAGAATATAAACCAATTCTAAAAGGCTGGTTCTGTAGTCTTGTCTCTGTCTATTCTCTCTCCAAAATTGTCCCTAAAGTCGGAAAATTTTCGGCGACGCTGAGCAAGATTGACGCCATTCATTTGAGAGACGAGGGTTTGGTATTGGGGGTATTGCTTCTGGCTCGGCTAGTGGCTAGTTACTGGCAGCAAGCGTTTCTGTGGGACGCCGCTTTGAATTCGGTGTATAAGGTTAGGGTTTTTGCCTTCGACAAGGTTTTGCAGAGGGATTTAGAGTTTTTTGAAGGTGGTGATGCCGTTTCTCCTGGTGATATTGCGTATCGGATGACTGCGGAGGCGTCAGATGTTGCCGATACCGTGCATGCTCTTCTGAATACCATTGTACCCAGTGCTCTGCAGTTATCGGCGATGGCAACGCAGATGTTATTTATCAGCCCTACACTTTCTTTGATTTCAGCCTTGGTTATTCCATTTATGTCTCTTGTTATTGCCCATCTCGGTGAAAGGCTTCGAAAGATATCTAAAAGGGCCCATCTTAGCATTGCTGCTCTCTCGGCATACTTGAATGAGATCCTCCCATCAATTCTTTTTGTGAAGGCAAGCAATGCAGAGTTGTCTGAGAGTGCTCGGTTTCGAAGACTTGCTCATACCGACCTATCTGAACGTTTGAAAAAGAGGAAAATGAAGGCTCTCATTCCTCAAATCATGCAAATTATATATTTTGGAGCATTATCAATATTTTTTGTTGGTTCACTGGTGGTTCCAAGTGGTGCTTTGGATGGCAGTCTCTTGGTTTCTTTTGTAACATCATTGGTTCTATTGATTGATCCAATCCAGGGTGTGGGAAAAGCTTACAATGAGTTGAAGCAAGGAGAGCCAGCTATTGAACGCTTGTTTGATTTGACCAGGTTTGAATCTCAGGTGCTTGAGAAACCTGATGCGGTTGATTTAGATTCTGTTATTGGAGAGGTGAAATTTTGTAATATCTCTTTTAGATATGGAGACAGGATGCCTCTTATTTTGAATGGATTGGACCTCCATATCAAAGCTGGTGAAACAGTTGCTCTTGTTGGGCCCTCTGGAGGAGGAAAGACAACCCTTGTAAAACTGCTTCTTCGACTTTATGATCCTTTATGTGGTTGTGTAATTCTTGATAACCATAATATTCAAGGCATCCGCTTGAAAAGTTTAAGGAGACATGTTGGTCTGGTTTCTCAGGATATAACACTTCTTTCAGGAACAGTTGTTGAAAACATTGGATATAGGGATCTGATGACTACAATTGACATGGAGAGAGTTGAGCTTGCAGCACAAACTGCAAATGCTGATGAATTCATTAGAAACCTTTCAGAAGGGTACCAAACCAATATTGGACCAAGGGGCTCAACATTAAGCGGCGGCCAGAAGCAAAGAATAGCTATTGCAAGGGCACTCTATCAGAACTGTTCCATACTGATTTTGGATGAAGCAACTTCTGCTTTAGATAGCAGGTCTGAGTTATTGGTGAGACAAGCTGTGGAGCGATTAATGGAAAATCGTACTGTGTTGGTCATTGCCCACCGCTTGGAAACTGTTCTGATGGCAAAACGCGTTTTTCTTCTGGATGATGGAAAGCTGGAGGAGCTAAATCGCTCAGCTCTTTTGGGTGGTAAGTCTGATTCCCTCTTATCAACAGGGCTGGTGATATGA 1893 0.4316 MATIQFTIAPPSSSPSLLGLRFKPRPTKLFAFSPNLTVKPSFKASLKPFNFISPSTFHSLEAIKPYVLSEYKPILKGWFCSLVSVYSLSKIVPKVGKFSATLSKIDAIHLRDEGLVLGVLLLARLVASYWQQAFLWDAALNSVYKVRVFAFDKVLQRDLEFFEGGDAVSPGDIAYRMTAEASDVADTVHALLNTIVPSALQLSAMATQMLFISPTLSLISALVIPFMSLVIAHLGERLRKISKRAHLSIAALSAYLNEILPSILFVKASNAELSESARFRRLAHTDLSERLKKRKMKALIPQIMQIIYFGALSIFFVGSLVVPSGALDGSLLVSFVTSLVLLIDPIQGVGKAYNELKQGEPAIERLFDLTRFESQVLEKPDAVDLDSVIGEVKFCNISFRYGDRMPLILNGLDLHIKAGETVALVGPSGGGKTTLVKLLLRLYDPLCGCVILDNHNIQGIRLKSLRRHVGLVSQDITLLSGTVVENIGYRDLMTTIDMERVELAAQTANADEFIRNLSEGYQTNIGPRGSTLSGGQKQRIAIARALYQNCSILILDEATSALDSRSELLVRQAVERLMENRTVLVIAHRLETVLMAKRVFLLDDGKLEELNRSALLGGKSDSLLSTGLVI* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1101 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 613 IPR027417 -
Vvi8g1101 630 ProSitePatterns ABC transporters family signature. 532 546 IPR017871 GO:0005524|GO:0016887
Vvi8g1101 630 SMART AAA_5 418 606 IPR003593 GO:0016887
Vvi8g1101 630 Pfam ABC transporter 409 560 IPR003439 GO:0005524
Vvi8g1101 630 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 392 629 IPR003439 GO:0005524
Vvi8g1101 630 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 114 610 IPR039421 -
Vvi8g1101 630 SUPERFAMILY ABC transporter transmembrane region 64 371 IPR036640 GO:0005524|GO:0016020
Vvi8g1101 630 FunFam ABC transporter related 61 372 - -
Vvi8g1101 630 FunFam ABC transporter ATP-binding protein 385 626 - -
Vvi8g1101 630 Pfam ABC transporter transmembrane region 82 345 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi8g1101 630 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 358 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi8g1101 630 CDD ABC_6TM_exporters 123 366 - -
Vvi8g1101 630 Gene3D ABC transporter type 1, transmembrane domain 73 371 IPR036640 GO:0005524|GO:0016020
Vvi8g1101 630 Gene3D - 382 626 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1101 Vvi-Chr8 17189583 17197775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1101 115 627 Calmodulin-binding Proteins AT2G36910 31.985 1.21e-60 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1101 K02021 - vvi:100264781 1166.76