LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g1085	ATGGGGAGCATGCTTTTGCATGTTACTGACTTGTCTGGGAGAGAAACCCTTGTTCGCATTACTGGTGGTATGAAGGTAAAAGCTGACAGGGATGAATCGTCACCATATGCAGCCATGCTTGCAGCACAAGATGTTGCTCAAAGATGCAAGGAACTTGGAATCACTGCCCTCCACATTAAGCTCCGGGCTACTGGAGGGAACAAGACTAAGACCCCTGGTCCAGGCGCCCAGTCTGCGCTTAGAGCCCTGGCTAGGTCAGGCATGAGAATTGGCCGCATAGAGGATGTTACTCCCATTCCTACTGACAGTACGCGAAGAAAAGGTGGCAGAAGGGGAAGAAGGTTGTGA	348	0.5115	MGSMLLHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL*	116

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g1085	115	Pfam	Ribosomal protein S11	5	111	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g1085	115	FunFam	40S ribosomal protein S14	2	115	-	-
	Vvi8g1085	115	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	3	112	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g1085	115	ProSitePatterns	Ribosomal protein S11 signature.	80	102	IPR018102	-
	Vvi8g1085	115	Gene3D	Ribosomal protein S11	3	115	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g1085	115	Hamap	30S ribosomal protein S11 [rpsK].	1	112	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g1085	115	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	5	110	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g1085	115	MobiDBLite	consensus disorder prediction	93	115	-	-
	Vvi8g1085	115	SUPERFAMILY	Translational machinery components	5	113	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g1085	Vvi-Chr8	17075251	17077459	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g1085	1	104	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	91.346	1.50e-67	198

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g1085	K02955		K01000	vvi:100255492	188.734