Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1077 ATGGAGGATATGCCCCCAGGGTTTCGCTTCTTCCCAACGGAAGAAGAGCTGGTTTCATTCTATTTGCACTACAAGCTTGAAGGAAGGAGACATGACTTGGACCGGATGATGGGTCGGGTTATTCCGGTTGTGGATATCTATGATCACAATCCCTGGGATCTTCCACAGATTTCGGGAGATTTGTGTCATGGAGATCATGAATGGTTCTTCTTCATTCCAAGACAGGAGAGAGAAGCCCGTGGAGGAAGACCCAATCGACTCACAACTTCTGGATACTGGAAAGCTACTGGATCTCCTGGCCATGTTTACTCATCTGGCCAAAACAGTCGCATAATTGGCGGAAAGAGAACCATGGTTTACTATGAAGGAAGGGCTCCCCACGGAAGAAAAACTGAATGGAAGATGAACGAGTATAAAGCCATTGATGGGGAAGCTGCCACTTCAAACACTGCAAATCCACCGTTACGACAAGAGTTCAGTCTGTGCCGAGTGTACATGAAAACCAAGTGCTTGCGAGCATTTGACAGACGGCCTTCGGGAGCATTGGGTCGCGAAGCAGCTTCTGGGCGAGCTAGAGGGGATGAAGCAGCAGCAACGTCTCGCCATCAGAACCCTCAAATGGTGGAGAGAACAAGCTCGCCTGAGAGCTCATCCTCATCAGGAGACCATGCCAATCCCTCTCAAACTGGGGAGAGCAGCAACTGGGAAATGAGCGCTGATAATCCACCTCTCTGGGAATGGGAACAACTGAATTGGTTCTAA 762 0.4948 MEDMPPGFRFFPTEEELVSFYLHYKLEGRRHDLDRMMGRVIPVVDIYDHNPWDLPQISGDLCHGDHEWFFFIPRQEREARGGRPNRLTTSGYWKATGSPGHVYSSGQNSRIIGGKRTMVYYEGRAPHGRKTEWKMNEYKAIDGEAATSNTANPPLRQEFSLCRVYMKTKCLRAFDRRPSGALGREAASGRARGDEAAATSRHQNPQMVERTSSPESSSSSGDHANPSQTGESSNWEMSADNPPLWEWEQLNWF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1077 253 MobiDBLite consensus disorder prediction 199 239 - -
Vvi8g1077 253 ProSiteProfiles NAC domain profile. 4 167 IPR003441 GO:0003677|GO:0006355
Vvi8g1077 253 MobiDBLite consensus disorder prediction 181 242 - -
Vvi8g1077 253 Gene3D NAC domain 13 171 IPR036093 GO:0003677|GO:0006355
Vvi8g1077 253 Pfam No apical meristem (NAM) protein 5 139 IPR003441 GO:0003677|GO:0006355
Vvi8g1077 253 SUPERFAMILY NAC domain 3 167 IPR036093 GO:0003677|GO:0006355
Vvi8g1077 253 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1077 Vvi-Chr8 17020590 17022239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1077 2 252 NAC Transcription Factor Family AT5G22380 52.778 1.28e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi8g1077 NAM 6.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1077 - - vvi:100249478 538.495