Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1072 ATGTGGGGAAGTGCAGATGGAGGAGCTCCAGAAGTCACTCTCGAGACTTCCATGGGTTCTTTCACGGTCGAGCTTTACTACAAGCACGCACCGAGAACTTGCAGAAACTTCTTAGAACTCTCCCGCAGAGGCTACTACGACAACGTCAAATTCCACAGAATCATCAAAGATTTCATAGTCCAAGGTGGAGATCCCACTGGCACAGGAAGGGGAGGAGAATCCATTTATGGATCAAAGTTTGAGGATGAGATAAAACCCGAGCTGAAACATACTGGAGCTGGTATTTTATCCATGGCAAATGCTGGTCCAAATTCAAATGGAAGCCAATTCTTTATTACCCTGGCCCCAGCACAATCACTGGATGGGAAGCACACAATATTTGGAAGGGTATGTAGGGGAATGGAAATTATCAAGAGACTTGGTAGCGTTCAAACAGATAATACAGATAGACCCATCCATGATGTGAAGATATTGCGTACAGCGGTGAAAGACTTGCAGTGA 501 0.4531 MWGSADGGAPEVTLETSMGSFTVELYYKHAPRTCRNFLELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGSKFEDEIKPELKHTGAGILSMANAGPNSNGSQFFITLAPAQSLDGKHTIFGRVCRGMEIIKRLGSVQTDNTDRPIHDVKILRTAVKDLQ* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1072 166 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Vvi8g1072 166 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413|GO:0003755
Vvi8g1072 166 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413|GO:0003755
Vvi8g1072 166 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Vvi8g1072 166 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413|GO:0003755
Vvi8g1072 166 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Vvi8g1072 166 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Vvi8g1072 166 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755|GO:0006457
Vvi8g1072 166 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 161 IPR002130 GO:0000413|GO:0003755
Vvi8g1072 166 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 161 IPR044666 -
Vvi8g1072 166 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Vvi8g1072 166 PIRSF Peptidylpro_ismrse 6 165 IPR024936 GO:0003755
Vvi8g1072 166 Gene3D - 4 166 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1072 Vvi-Chr8 16959574 16963687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1072 12 162 U-box Gene Family AT5G67530 48.344 5.56e-50 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1072 K12733 - vvi:100264827 336.65