Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1068 ATGGCGGCGTTTGCCCGAATCGGCCGAAGAAACCTCACTAACTTATCACCGTCCTTCCTCCTTCCTCCAGCCCTTCTCATTTGTTGCAGAGGAATCGCTTCCAAGCTTTTCGTTGGAGGGCTGTCATTTTACACCACTGAGAAGGGCTTATCAGAGCATTTTTCTCAATATGGCCAAGTTGTTGAAGCTAAAATTGTAATGGATAGAGTCTCAGACAGATCAAAAGGTTTTGGATTTGTAACCTTTGCTTCAGAAGAAGAAGCCCAGAAAGCCAGAACTGAGATGGATGGAAAGGAACTGAATGGACGCACTATTTTTGTGGATTATGCAAAGCCAAGAGCTGATTTCGGTGGTGGAATGCCCATAGCAAGAGGACCCCCCGAACCAACAGCTGATAGTTGA 402 0.4602 MAAFARIGRRNLTNLSPSFLLPPALLICCRGIASKLFVGGLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEMDGKELNGRTIFVDYAKPRADFGGGMPIARGPPEPTADS* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1068 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 105 IPR000504 GO:0003723
Vvi8g1068 133 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 118 - -
Vvi8g1068 133 Gene3D - 32 128 IPR012677 -
Vvi8g1068 133 SMART rrm1_1 35 108 IPR000504 GO:0003723
Vvi8g1068 133 FunFam RNA-binding family protein 19 128 - -
Vvi8g1068 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Vvi8g1068 133 SUPERFAMILY RNA-binding domain, RBD 35 125 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1068 Vvi-Chr8 16919888 16922227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1068 34 115 Eukaryotic Initiation Factors Gene Family AT1G22760 31.707 3.06e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1068 - - vvi:100247739 262.307