Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1063 ATGCCCATGAACCACTTCTCTCCAAACCTTCCAGAAACAATCTGGTGGACACAAGTCACACAACCACAACCCATAATGGAACCAGCCCCAAATACCCCTTCCTCTAAACACAAACCCCTCATCCCCCACCACCACCATCCCCTAGTTTCCCTCAATTCCTACCACTCCCAACACTCACCCCCCATGTTCCCTACCCGTAGCACTACCCCTTTCAACTTCAACCTTAACCAAGATACAGAAGACGATGAAGATGAGGAGGTCGAGGAAGTAGCTGCGGAAGAAGAGGAGGAAGAAGTGATAATAGGGGCAGAGAGACAACCCATGTTCGAGAAGCCCTTAACTCCTAGCGACGTAGGTAAGCTTAACCGACTAGTCATACCAAAACAACACGCGGAGAAGTACTTCCCGCTGGGCGGTGACTCGGGCGAGAAAGGCTTGTTACTGAGTTTCGAAGACGAGTGTGGCAAGTGTTGGAGGTTTCGATACTCGTATTGGAACAGTAGCCAAAGTTATGTATTGACGAAAGGGTGGAGCCGTTTCGTCAAAGAAAAGAGGCTGGATGCAGGCGACGTCGTTTTGTTCCAGCGAGACCGCTCCGACGCTGACCGCTTCTTTATTGGTTGGAGGCGCCGTGCTGGCCCTGCGCAGGATAACCCTGCGGCGGCTCCCCCTGTCGCTGTTCACACCAATACTGGCAATACTTCTGTGGGGTGGACCAGGGTGTTCTATTCTGCGCATGCTTATCCTTCGCATCCCCATGCCCCTCCCCTACCATACCAACCTGACTGTCTTCATGCAGGGTCGGTTGCAAAGAATCAAACGACGCCGGTGGGGAACTCAAAGAGACTCAGGCTGTTTGGGGTGAACCTGGAGTGCCAAATGGATGAGTCCGAACCATCCACTCCTGACGGTTCCTCATTGTCGAGCCAGGGGCCAGTGCACCACCAATTTTACCCTCAAGCTTACTCTTCCAACGCATACAACCACATGGATATCAATTTCTCCCGAGACGTCAACCAGATGAGAGATCACCGAGGATAA 1041 0.5235 MPMNHFSPNLPETIWWTQVTQPQPIMEPAPNTPSSKHKPLIPHHHHPLVSLNSYHSQHSPPMFPTRSTTPFNFNLNQDTEDDEDEEVEEVAAEEEEEEVIIGAERQPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGDSGEKGLLLSFEDECGKCWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVLFQRDRSDADRFFIGWRRRAGPAQDNPAAAPPVAVHTNTGNTSVGWTRVFYSAHAYPSHPHAPPLPYQPDCLHAGSVAKNQTTPVGNSKRLRLFGVNLECQMDESEPSTPDGSSLSSQGPVHHQFYPQAYSSNAYNHMDINFSRDVNQMRDHRG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1063 346 ProSiteProfiles B3 DNA-binding domain profile. 109 212 IPR003340 GO:0003677
Vvi8g1063 346 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 51 301 IPR044800 GO:0003700
Vvi8g1063 346 MobiDBLite consensus disorder prediction 294 314 - -
Vvi8g1063 346 SMART B3_2 109 212 IPR003340 GO:0003677
Vvi8g1063 346 MobiDBLite consensus disorder prediction 25 45 - -
Vvi8g1063 346 SUPERFAMILY DNA-binding pseudobarrel domain 106 212 IPR015300 -
Vvi8g1063 346 Coils Coil 76 96 - -
Vvi8g1063 346 CDD B3_DNA 107 200 IPR003340 GO:0003677
Vvi8g1063 346 Gene3D - 102 218 IPR015300 -
Vvi8g1063 346 Pfam B3 DNA binding domain 109 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1063 Vvi-Chr8 16861527 16863847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1063 105 298 RAV Transcription Factor Family AT5G06250 56.459 3.44e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi8g1063 B3 2.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1063 - - vvi:100245964 662.529