Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1038 ATGGGGAAGAGGACGAAGTTCCCATTTCTGTTGAAGAACGTAGATGCTAGGTTTCCATGGCAATGGCCATACTGTACGCAGCCCAAAACCCTGTCTTTCAGAGTTGGCAGCAGCGACATGTTCAAGACCCTCAACTCCGCCTACTCTGATGTCGTTGACACGCAGGAGTTATGGTCCACCAACTCATCCGAGTCGGAAAGCTTCTCCGGATCCTCGGAGGAGTCTGGAGGTGAGTGCATAGAGACTGTGATTCGTGGGCTGAGGTCGGAAAGGCTGTTTTTCGAGCCAGGTGAGACGAGTTCCATATTGGAGGAGGCGAAGGGAGGCGGGTTTCCATTCAAGGAGAGTGTGGTTTTGTCCATGGAGTCGGAGGACCCTTACGTGGACTTTCGGAGGTCGATGGAGGAGATGGCGGAGGCTCATGGGTTGAAGGATTGGGAGTCCCTTGAAGAGCTGTTGAGTTGGTATTTGAGGGTCAATGAAAAGCAGAATCATGGTTACATCATCGGAGCTTTTGTTGATTTACTTGTTACTTTTGCTTTTACTTCTTCTTCTTCTTTTTCTACTTCTCCTTCTCCTTCTCCTTCCTCTCCTTTGTCTTTTGCTTCTTCTTCCTGTTCTTCCACTACTCCTTGTTTATCTTCTTCAATAGAGATTGAAGATGACAATGGTTCATCTCTGCATGTTTGA 690 0.4797 MGKRTKFPFLLKNVDARFPWQWPYCTQPKTLSFRVGSSDMFKTLNSAYSDVVDTQELWSTNSSESESFSGSSEESGGECIETVIRGLRSERLFFEPGETSSILEEAKGGGFPFKESVVLSMESEDPYVDFRRSMEEMAEAHGLKDWESLEELLSWYLRVNEKQNHGYIIGAFVDLLVTFAFTSSSSFSTSPSPSPSSPLSFASSSCSSTTPCLSSSIEIEDDNGSSLHV* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1038 229 ProSiteProfiles OVATE domain profile. 119 178 IPR006458 -
Vvi8g1038 229 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 66 180 IPR038933 GO:0045892
Vvi8g1038 229 Pfam Transcriptional repressor, ovate 123 178 IPR006458 -
Vvi8g1038 229 NCBIfam uncharacterized plant-specific domain TIGR01568 117 178 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1038 Vvi-Chr8 16659849 16660538 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vvi8g1038 Ovate 7.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1038 - - vvi:100251218 357.066