Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1037 ATGCCCACCAATAGGAGGAAGCTCCGTCTCAACACAGTGACTGTAAACCTTGGTTGCCGTTGTCGGAGGCCGAAACTCTCCGATATCTTCAACCCCAAACCCAAAGCCAAAACAACTCCCGTTTGCCGCAGGCCGGATACGTATCGTTCCTCTTCAAGCTCATGGGAAAAGGGTGGCTGCTCCACCGACCAAGACGACACCACCACCACATTCTCTCCCAACGTAGGCACGTCGTCGGATTACTCCGAAACCGATTACGAAGCGAAGAGCTCTAAAAAGGTCCGTGGGTTCGGGAGAATCGGGGGGGAGAGCATGGCGGTGGAGAAAGACTCGGACGACCCATATCTGGATTTCCGGCACTCCATGCTTCAGATGATCCTAGAGAAGGAAATATACTCGAAGGACGATCTTAGAGAGCTTCTCAACTGCTTCTTGCAGCTCAACTCGCCATACTATCATGGAGTCATTGTTCGAGCTTTCACTGAGATCTGGAATGGGGTCTTCTCTGTGAGGTCCGCTTCTCCAAAGCCCCATGGTTCCCGCAAGTCACGTGACTTCTAA 561 0.5241 MPTNRRKLRLNTVTVNLGCRCRRPKLSDIFNPKPKAKTTPVCRRPDTYRSSSSSWEKGGCSTDQDDTTTTFSPNVGTSSDYSETDYEAKSSKKVRGFGRIGGESMAVEKDSDDPYLDFRHSMLQMILEKEIYSKDDLRELLNCFLQLNSPYYHGVIVRAFTEIWNGVFSVRSASPKPHGSRKSRDF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1037 186 Pfam Transcriptional repressor, ovate 111 167 IPR006458 -
Vvi8g1037 186 MobiDBLite consensus disorder prediction 44 84 - -
Vvi8g1037 186 ProSiteProfiles OVATE domain profile. 107 166 IPR006458 -
Vvi8g1037 186 MobiDBLite consensus disorder prediction 30 84 - -
Vvi8g1037 186 NCBIfam uncharacterized plant-specific domain TIGR01568 105 165 IPR006458 -
Vvi8g1037 186 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 54 169 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1037 Vvi-Chr8 16652273 16652833 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vvi8g1037 Ovate 5.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1037 - - vvi:104880159 370.548