Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1033 ATGTCTGGACCTCGAGCTCCCACCCGCTCCGCGCCTCCGCCGCCTTCCTCTGGTCAGATCCTGCGGCCGATGAAGCGTCACCTCCCCTTCACGTCTACCAAGCCGCCGTTCGTCCCTCCTGACGATTACCACCGGTTTTCGTCTGCCGATGCTCACGGGGTTGCCAATCACGAACCTGAAGGCATTGTCGTCAAGTCCCCTCAATTGAAGCGGAAAAGTGCAATGGATGACAATGAAGTCGGATCTAGTGAATGGACTGCCAGTCCTGGATATGCTGATGCAGGTAACAGTCCCTTTCGAACTCCTGTTTCTGGAAAAGGGGGAAGGATATACAGCAAGTCAAAGGTCTCAAAGGGCAATGTATGTGGACCTCAGACCCCTGTGTCAAATGCTGGTTCCCCTTCTACTCTTACTCCAGCTGGCAACTGCCGCTATGACAGTTCGCTAGGTCTTTTAACAAAAAAGTTCATCAATTTGATCAAGCATGCAGAGGATGGTATTCTTGACCTAAACAAAGCTGCTGAGACTTTGGAGGTTCAGAAGAGGCGGATATATGACATAACAAATGTTCTGGAAGGAATTGGTCTCATTGAAAAGAAGCTCAAGAACAGGATCCGCTGGAAGGGGCTTGATGTTTCAAGGCCAGGGGAGGTTGATGATGATGTCACCATTTTACAGGCAGAAGTTGAAAACCTTTCCCTGGAAGAACGCAGATTAGATGATCACATCAGGGAAATGCAGGAAAAGTTGAGGGATTTGAGCGAAGATGAAAACAATCAAAAGTGGCTTTTTGTGACTGAAGATGACATCAAGGGCCTACCCTGCTTTCAGAATGAGACCCTTATAGCAATTAAAGCTCCACATGGGACCACTCTGGAAGTTCCAGATCCTGATGAGGCTGTTGACTATCCACAGAGAAGATATCGTATAGTCCTTAGAAGCACAATGGGTCCAATCGATGTCTACCTTGTCAGTCAATTTGAGGAAAAATTTGAGGAGATGAATGGGACTCCGCCTCCTTTGAGCTTTCCTCTTGCATCAAGTTCAGGGTCTAATGAGAACCCATCAACAGAGGTCGTCATTGCTGATAGCAGTGGGAAGGAACTTGAACCTCAAGATGGTTATCAAATGTGTTCTGATCTTACTGCATCACAGGAGTTTATCGGAGGAATCATGAAGATCGTTCCTGATGTTGATAGTGATGCTGATTACTGGCTTCGATCAGATGCAGAAGTTAGCATTACAGATATGTGGAAGACAGACTCGTATGTTGAATGGAATGGAGTGGATATGCTTAACGCAGAGTTTGGAATGGCTGATGTCAGTACTCCACTGCCTCAAACACCTCCATCTGGCCTTACCGAGGGGCCGTCTACTGCTGTTAACCCTACACATAGGTGA 1401 0.4732 MSGPRAPTRSAPPPPSSGQILRPMKRHLPFTSTKPPFVPPDDYHRFSSADAHGVANHEPEGIVVKSPQLKRKSAMDDNEVGSSEWTASPGYADAGNSPFRTPVSGKGGRIYSKSKVSKGNVCGPQTPVSNAGSPSTLTPAGNCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDVSRPGEVDDDVTILQAEVENLSLEERRLDDHIREMQEKLRDLSEDENNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNGTPPPLSFPLASSSGSNENPSTEVVIADSSGKELEPQDGYQMCSDLTASQEFIGGIMKIVPDVDSDADYWLRSDAEVSITDMWKTDSYVEWNGVDMLNAEFGMADVSTPLPQTPPSGLTEGPSTAVNPTHR* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1033 466 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Vvi8g1033 466 FunFam E2F transcription factor 1 138 211 - -
Vvi8g1033 466 MobiDBLite consensus disorder prediction 441 466 - -
Vvi8g1033 466 Coils Coil 225 259 - -
Vvi8g1033 466 SUPERFAMILY E2F-DP heterodimerization region 221 326 IPR037241 -
Vvi8g1033 466 PANTHER TRANSCRIPTION FACTOR E2F 81 423 IPR015633 GO:0000978|GO:0006357
Vvi8g1033 466 MobiDBLite consensus disorder prediction 444 466 - -
Vvi8g1033 466 CDD E2F_DD 220 326 IPR032198 GO:0046983
Vvi8g1033 466 SUPERFAMILY "Winged helix" DNA-binding domain 144 207 IPR036390 -
Vvi8g1033 466 MobiDBLite consensus disorder prediction 333 357 - -
Vvi8g1033 466 MobiDBLite consensus disorder prediction 1 83 - -
Vvi8g1033 466 Coils Coil 160 180 - -
Vvi8g1033 466 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
Vvi8g1033 466 MobiDBLite consensus disorder prediction 341 357 - -
Vvi8g1033 466 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983
Vvi8g1033 466 Gene3D - 138 211 IPR036388 -
Vvi8g1033 466 Gene3D - 216 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1033 Vvi-Chr8 16621686 16626844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1033 16 466 E2F-DP Transcription Factor Family AT2G36010 58.105 2.57e-174 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vvi8g1033 E2F_CC-MB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1033 K06620 - vvi:100249486 923.694