Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1032 ATGCAAGAAACCATCCACCTTTCCTCCAAACACAGCTCCTTTCCCAAATCCCATGTTCTCCATTCCCACCATGATTTTTCTACACTTTCCCGCCCCAGAATCATCCACTTCCCCATCCTTTCCTCAAAAACTTCAATCACCATCCCACCCAAACCCTCCAAATCCCCAGAACTCCCTTCCATATCCCCACCTTCCTCTCCCGACCCTCCCGACCCTCACTCCCAATTCGAAGAAAAAATGCTCTACCTCGACTCCATCGGCCTCGATCTCTTCTCTCTCATCAACGACCATCCTCCCATCGTCTGCGCATCCCTCGACGACATCAAATCCACTGTTGATTTCTTGTACTCCATGGGCTTTACCGCGCTAGAGTTCTGCCGCATCTGCGGCATGTGCCCGGAGATTCTCAACTCCCGCGTTTCGGACATCGTTCCCGTTTTCACCTTTCTCCTCCGCGAAGCCCGAGTGGACGGCTCCGATTTGCGCCGCGTGGTTAACCGGCGCCCCAGATTGCTCGCTTGTAATGTCAAGAACCGCCTCCGCCCCACCCTCTATTTCCTCCAGAGCATAGGCATTTCAGAGGTAAACAAACACACCAATTTGTTATCATGCAGCGTTGAAGAAAAGCTGATACCCAGAATTGATTACTTAGAAAAAATTGGGTTTTCGAAACGGGACGCAGTTTCCATGGTCCGGAGGTTTCCCCAACTATTCAACCACAGTATTAAAGATAATTTGGAGCCCAAATTCAATTACTTCGTGGTGGAAATGGGTAGGGAACTGAGAGAGCTGAAGGAGTTCCCACAGTACTTCTCATTTAGTTTGGAGAATAGGATAAAGCCTAGGCACCAGTGTTGTGTGGAAAAAGGGGTGTGCTTTCCTCTCCCTATAATGTTAAAGACCACTGAAGCCAAGTTTCATGGTCGATTGGAGGTATGTTGTAATTCTTCGGGGCCTTTGAGAACTTCTCCTCTGTGGTGTACAAATTGTGATTTTAACCTAATGTTGGTTATTTAG 1017 0.4838 MQETIHLSSKHSSFPKSHVLHSHHDFSTLSRPRIIHFPILSSKTSITIPPKPSKSPELPSISPPSSPDPPDPHSQFEEKMLYLDSIGLDLFSLINDHPPIVCASLDDIKSTVDFLYSMGFTALEFCRICGMCPEILNSRVSDIVPVFTFLLREARVDGSDLRRVVNRRPRLLACNVKNRLRPTLYFLQSIGISEVNKHTNLLSCSVEEKLIPRIDYLEKIGFSKRDAVSMVRRFPQLFNHSIKDNLEPKFNYFVVEMGRELRELKEFPQYFSFSLENRIKPRHQCCVEKGVCFPLPIMLKTTEAKFHGRLEVCCNSSGPLRTSPLWCTNCDFNLMLVI* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1032 338 PANTHER CGI-12 PROTEIN-RELATED 63 309 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 FunFam Transcription termination factor MTEF1, chloroplastic 150 314 - -
Vvi8g1032 338 Pfam mTERF 78 153 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 Pfam mTERF 151 306 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 SMART mt_12 228 260 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 SMART mt_12 91 121 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 SMART mt_12 162 193 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 SMART mt_12 194 223 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Vvi8g1032 338 MobiDBLite consensus disorder prediction 45 74 - -
Vvi8g1032 338 Gene3D Transcription termination factor 3, mitochondrial 149 313 IPR038538 -
Vvi8g1032 338 MobiDBLite consensus disorder prediction 52 71 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi8g1032 mTERF 6.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1032 K15032 - vvi:100254596 622.854