Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1012 ATGGTGAAGCGTCACAGATCTGCCATGGAAGCTGACCAGACAAAGCTTGTTTTTGGAGTGCTTTTCTCTCTTGTTGCTGTGGTTTTTACTGCAACAGACCCAAATGACCTTGCAATTCTGAACCAGTTCAGAAAAGGGTTGAAGAATCCAGAGCTCTTGAACTGGCCTGAAAATGGTGATGACCCATGCGGTATCCCACGCTGGGATCACGTCTTCTGCAGTGGTTCAAGGGTTTCTCAGATTCAGGTTCAGAACCTGGGCTTGAAGGGTCCTCTGCCTCAGAACCTCAACCAGCTCTCCATGCTCACAAGTCTTGGCCTTCAGAGGAACCAATTCAGTGGCCAATTGCCATCACTCAGCGGCTTATCGGAACTGCGGTACGCTTATTTCGATTTCAATGAATTTGATTCCATACCATCTGATTTTTTCGATGGTCTCGTCAATTTAGAGGTTCTAGAACTGGATAACAATAATTTGAATGTCACTACTGGATGGTCCCTCCCGTCTCAGTTGCAAAATTCAGCTCAGCTGAGAAATTTGACGTTGGTAAATAGCAATTTGGTTGGTCCTTTGCCGGAATTTTTGGGGAACATGTCGTCGTTGGCAGTATTAAAACTGTCAATGAATACAATTTCCGGTGGAATTCCAGCGAGTTTTAAGGACTCCAATTTGGAAATTCTTTGGTTGAATAATCAGAAAGGGGGTCAGATGACAGGTCCTATTGATGTGGTGGCAACAATGTTATCTCTTACCACACTGTGGCTTCATGGGAACAAGTTCAGTGGGCCAATTCCTGAGAACATTGGAGATTTAACTTCTTTGAAGGATCTTAATCTCAACAGCAACCAACTGGTGGGGTTAATTCCTGATAGCTTGGCAAGTTTGGAGCTTAACAGTTTGGATTTGAATAATAATCAGTTGATGGGTCCAATTCCAAATTTCAAAGCTGTTAATGTGTCCTATGATTCAAACCAATTATGTCAATCTAAACCGGGAGTTCCTTGTGCCAAGGAAGTAATGGTCCTCTTGGAGTTCCTTGGTGGTTTGAATTATCCTAACCACCTTGTTTCTTCCTGGTCTGGTAATGACCCCTGTGAAGGGCCATGGTTGGGATTGTCCTGCGCCGACCAAAAGGTTTCCATCATAAATTTGCCTAAGTTTGGTTTTAATGGTACCTTGAGCCCTTCTCTTGCAAACCTAGAGTCTCTTTCTCAAATTAGACTTCCATCCAACAATATAACAGGTCAGGTTCCCACTAACTGGACTAGCTTGAAATCTCTGACATATTTGGATTTGAGTGGCAATAACATTTCCCCTCCATTTCCAAACTTCAGCAAAACAGTAAAACTTGTCCTATATGGCAATCCTCTATTAAGCAGTAATCAGTCTACTACACCGGGAAACAGTCCGTCATCTGGAGGTTCACAATCATCCTCTGGCTCAGCTTCACCAACCATGGGATCAAATTCTGGCACCAGTGATTCGTCTGAAGAACCAACCAAAAATAAAAATTCCAAAGGGCCCAAGTTAGTTGTAATTGTAGTCCCTCTTGCGAGTTTTGCACTTCTTGTTTTTCTGGTTGCTCCTCTTTCTATTTATTACTGTAAGAAGAGGAAAAATACCAACCAGGCTTCTAGTTCCCTTGTGATTCACCCAAGAGATCCGTCTGACTCAGAAAATATGGTTAAGATTGTAGTGGCCAATAGCAACAATGGAAGTGTTTCCACACTGGGGGCTTGTTCTGGAAGCAGAAATAGTAGTGGGACAGGTGAATCTCATGTCATTGAGGCTGGAAATTTGGTCATATCTGTTCAAGTTCTTCGAAATGTAACCAAGAACTTTGCCCCAGAAAATGTACTTGGACGTGGAGGTTTTGGTGTTGTTTATAAGGGAGAACTGGATGATGGAACAAAAATAGCAGTGAAAAGAATGGAGGCAGGCATCATTAGCAGCAAAGCTTTGGATGAATTTCAGGCTGAAATTGCAGTTCTTTCAAAGGTCCGGCACCGTCATTTGGTATCTCTTTTGGGGTATTCTGTTGAAGGAAATGAGAGGATTCTGGTATACGAATACATGCCTCAAGGGGCTCTCAGCAAGCACCTTTTCCATTGGAAGAGCCTTAAATTGGAGCCTCTATCTTGGAAGAGAAGGCTAAACATTGCTCTGGATGTTGCTAGAGGGATGGAATATCTTCATACTCTGGCTCATCAAACCTTCATACACAGAGATCTTAAATCTTCAAATATCTTGCTTGGTGATGATTACAGGGCGAAAGTTTCAGATTTTGGATTGGTGAAACTCGCCCCTGATGGGGAGAAGTCTGTGGTGACCAAGCTTGCTGGGACATTTGGATACTTAGCACCAGAATACGCCGTGACAGGAAAAATCACAGTTAAAGTGGATGTCTTCAGTTTTGGGGTTGTGTTAATGGAGCTATTGACTGGATTGATGGCACTAGATGAAGACAGGCCTGAGGAAAGCCAATACTTGGCGGCATGGTTCTGGCACATAAAATCTAACAAGGAGAAGTTGATGGCTGCCATAGATCCAGTCCTTGACAAGAAAGAAGAAACATTAGAGAGCATCTCCACTATCGCAGAACTGGCTGGGCACTGCACAGCAAGAGAGCCGAGCCAACGACCTGAAATGGGCCATGCAGTGAACGTACTGGCCCCTCTTGTTGAGAAATGGAAGCCATTTGATGATGACACAGAGGAGTATTCTGGTATTGATTACAGCCTTCCCCTGAACCAGATGGTGAAGGGATGGCAAGAAGCAGAAGGAAAGGACTTCAGCTACTTGGACCTAGAGGATAGCAAGGGGAGTATCCCAGCAAGGCCAACTGGATTTGCAGATTCCTTCACTTCAGCTGATGGTCGATAA 2883 0.4384 MVKRHRSAMEADQTKLVFGVLFSLVAVVFTATDPNDLAILNQFRKGLKNPELLNWPENGDDPCGIPRWDHVFCSGSRVSQIQVQNLGLKGPLPQNLNQLSMLTSLGLQRNQFSGQLPSLSGLSELRYAYFDFNEFDSIPSDFFDGLVNLEVLELDNNNLNVTTGWSLPSQLQNSAQLRNLTLVNSNLVGPLPEFLGNMSSLAVLKLSMNTISGGIPASFKDSNLEILWLNNQKGGQMTGPIDVVATMLSLTTLWLHGNKFSGPIPENIGDLTSLKDLNLNSNQLVGLIPDSLASLELNSLDLNNNQLMGPIPNFKAVNVSYDSNQLCQSKPGVPCAKEVMVLLEFLGGLNYPNHLVSSWSGNDPCEGPWLGLSCADQKVSIINLPKFGFNGTLSPSLANLESLSQIRLPSNNITGQVPTNWTSLKSLTYLDLSGNNISPPFPNFSKTVKLVLYGNPLLSSNQSTTPGNSPSSGGSQSSSGSASPTMGSNSGTSDSSEEPTKNKNSKGPKLVVIVVPLASFALLVFLVAPLSIYYCKKRKNTNQASSSLVIHPRDPSDSENMVKIVVANSNNGSVSTLGACSGSRNSSGTGESHVIEAGNLVISVQVLRNVTKNFAPENVLGRGGFGVVYKGELDDGTKIAVKRMEAGIISSKALDEFQAEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSKHLFHWKSLKLEPLSWKRRLNIALDVARGMEYLHTLAHQTFIHRDLKSSNILLGDDYRAKVSDFGLVKLAPDGEKSVVTKLAGTFGYLAPEYAVTGKITVKVDVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSNKEKLMAAIDPVLDKKEETLESISTIAELAGHCTAREPSQRPEMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDFSYLDLEDSKGSIPARPTGFADSFTSADGR* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1012 960 Pfam Leucine rich repeat 249 307 IPR001611 GO:0005515
Vvi8g1012 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Vvi8g1012 960 CDD STKc_IRAK 620 893 - -
Vvi8g1012 960 PANTHER OSJNBA0070M12.3 PROTEIN 17 960 - -
Vvi8g1012 960 FunFam receptor protein kinase TMK1 577 691 - -
Vvi8g1012 960 Gene3D Transferase(Phosphotransferase) domain 1 692 910 - -
Vvi8g1012 960 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Vvi8g1012 960 Pfam Protein tyrosine and serine/threonine kinase 618 888 IPR001245 GO:0004672|GO:0006468
Vvi8g1012 960 FunFam receptor protein kinase TMK1 692 909 - -
Vvi8g1012 960 Gene3D Ribonuclease Inhibitor 337 462 IPR032675 -
Vvi8g1012 960 Gene3D Phosphorylase Kinase; domain 1 578 691 - -
Vvi8g1012 960 SMART serkin_6 614 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1012 960 MobiDBLite consensus disorder prediction 940 960 - -
Vvi8g1012 960 FunFam Receptor-like kinase TMK4 34 332 - -
Vvi8g1012 960 MobiDBLite consensus disorder prediction 461 505 - -
Vvi8g1012 960 Gene3D Ribonuclease Inhibitor 34 333 IPR032675 -
Vvi8g1012 960 SUPERFAMILY L domain-like 39 457 - -
Vvi8g1012 960 MobiDBLite consensus disorder prediction 461 498 - -
Vvi8g1012 960 SMART LRR_typ_2 122 145 IPR003591 -
Vvi8g1012 960 SMART LRR_typ_2 271 294 IPR003591 -
Vvi8g1012 960 SMART LRR_typ_2 424 446 IPR003591 -
Vvi8g1012 960 SMART LRR_typ_2 146 173 IPR003591 -
Vvi8g1012 960 FunFam Leucine-rich repeat receptor-like kinase 337 461 - -
Vvi8g1012 960 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vvi8g1012 960 Pfam Leucine rich repeat N-terminal domain 338 374 IPR013210 -
Vvi8g1012 960 SUPERFAMILY Protein kinase-like (PK-like) 589 890 IPR011009 -
Vvi8g1012 960 ProSiteProfiles Protein kinase domain profile. 614 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1012 Vvi-Chr8 16334403 16337870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1012 74 894 Receptor kinase-like Gene Family AT5G07180 29.465 7.96e-82 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vvi8g1012 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1012 - - vvi:100247635 1826.22