Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1007 ATGGCGTCTCAGGAGCCGTGGCAGATGGAGAACGGCAACCTCAAGGGCTCCAGCAAGGAGATTAAACATGGAAGGACCGCCCACAACATGTCCTCTTCTTCCCTTCGGAAGAAGTCCGATCTCTCCCTTGTCAACAAAGTTCCCTGCGGATTGGTGAGGCAGCTATTGGCCAATCTCCAGGAGGTCATCCTCGGGACTAAGCTCTCCGTTCTCTTTCCGGCTATCCCGCTTGCCATCGTCGCCCAGTACTACGGCTTTGCCGGGCCTTGGATTTTCGGTCTGAGCTTGCTTGGACTCACCCCGCTTGCTGAACGGCTTGGCTTTCTGACCGAGCAAATAGCATATTATACTGGTCCAACAGTTGGAGGGCTTCTAAATGCAACATGTGGTAATGCCACAGAGCTGATAATTGCAATATTCGCTTTGAGCAAGAACAAAATTTTAGTGGTGAAGTATTCTCTACTGGGCTCTGTGCTCTCCAATCTTCTTCTGGTTCTTGGGACTTCTCTCTTCTGTGGTGGCATTTACAACCTTAGAGAGGAGCAGAAATATGATAGGAAACAATCCGACATAAACTCGCTCCTTCTGCTTCTGGGATTGTTGTGCCACATGCTACCATTGATGTTTCGGTATGCAGCAAACCCCAGTGGTGCCGCTCTTATTGCAGACTCAACTCTCTCTCTATCAAGAGCTGGCAGCATTGTGATGCTCGTAGCATACTTGGCTTACCTAGTTTTCCAGTTGTGGACCCACAGGAAATTGTTTGAGGCACCAGAGGATGGTGATGATGACACTGTGAGTTCTGATGAAGAGCCTGTTATAGGATTTTGGAGTTCAGTTGTCTGGCTGATTTTAATGACGGCTATCATTGCTTTATTATCTGAGTTTGTTGTCGGCACGATTGAGGTTGCATCAGAATCTTGGGGTATTTCTGTCAGCTTCATCAGCATAATCTTGTTGCCCATAGTTGGAAACGCTGCAGAACATGCTGGAGCAGTCATATTCGCCTTTAAGAACAAGTTGGATATATCTTTGGGTGTTGCTTTGGGGTCTGCAACTCAAATTGCAATGTTTGTGGTTCCATTATGCGTGTTGGTTGCCTGGATAATGGGCATCAGGATGGATCTTGATTTCAGTCTCCTTGAGACAAGCTCTCTTGCTTTAGCCATAATTGTCACAGCCTTCACTCTACAGGATGGATCTTCTCACTACATGAAAGGATTGGTCCTTCTGCTGTGCTATGTTGTTATCGGGGCCTGCTTTTTCGTTTCCAAAACAACCCCCGACCAAGGAAATGGCATCACCCCGGGGATCAAGTTGCCAACTGAAGGAGTCGTCAGTGCTTAA 1347 0.4751 MASQEPWQMENGNLKGSSKEIKHGRTAHNMSSSSLRKKSDLSLVNKVPCGLVRQLLANLQEVILGTKLSVLFPAIPLAIVAQYYGFAGPWIFGLSLLGLTPLAERLGFLTEQIAYYTGPTVGGLLNATCGNATELIIAIFALSKNKILVVKYSLLGSVLSNLLLVLGTSLFCGGIYNLREEQKYDRKQSDINSLLLLLGLLCHMLPLMFRYAANPSGAALIADSTLSLSRAGSIVMLVAYLAYLVFQLWTHRKLFEAPEDGDDDTVSSDEEPVIGFWSSVVWLILMTAIIALLSEFVVGTIEVASESWGISVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIAMFVVPLCVLVAWIMGIRMDLDFSLLETSSLALAIIVTAFTLQDGSSHYMKGLVLLLCYVVIGACFFVSKTTPDQGNGITPGIKLPTEGVVSA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1007 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 18 425 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vvi8g1007 448 MobiDBLite consensus disorder prediction 1 15 - -
Vvi8g1007 448 NCBIfam calcium/proton exchanger 54 422 - -
Vvi8g1007 448 FunFam Vacuolar cation/proton exchanger 119 265 - -
Vvi8g1007 448 NCBIfam calcium/proton exchanger 73 422 IPR004798 GO:0006816|GO:0015369
Vvi8g1007 448 MobiDBLite consensus disorder prediction 1 34 - -
Vvi8g1007 448 Gene3D - 119 265 IPR044880 -
Vvi8g1007 448 Gene3D - 266 422 IPR044880 -
Vvi8g1007 448 Pfam Sodium/calcium exchanger protein 89 249 IPR004837 GO:0016020|GO:0055085
Vvi8g1007 448 Pfam Sodium/calcium exchanger protein 279 417 IPR004837 GO:0016020|GO:0055085
Vvi8g1007 448 FunFam Vacuolar cation/proton exchanger 267 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1007 Vvi-Chr8 16261933 16265876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1007 5 425 Antiporters AT2G38170 71.096 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1007 K07300 - vvi:100240763 840.491