Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1003 ATGAAGGCTGCCAAGGGTAAGGGGGCAGCAAGGAGGGACACAAAGGAAGCATTGAAGCCTGCTGAAGACAGAAAGATTGGGAAGCGAAAGGCTGCTGTTAAGGCAGAAAAGAGTAGCAAAAGAGCGACCACGAAAGACAAAAAGGCCAAGAAAGACCCCAACAAACCAAAGAGGCCTCCCAGTGCCTTTTTTGTATTCCTTGAGGAGTTCAGAAAGGTCTTCAAAAAGGAAAATCCCAATGTGAAGGCTGTCTCAGCTGTTGGGAAAGCTGGCGGAGAGAGGTGGAAATCCTTGTCTGAGGCTGAAAAAGCTCCATATGAGGCCAAAGCTGCAAAAAAGAAGGCTGAGTACGAAAAAATTATGAATGCTTACAACAAGAAGCAGGAGAGCACTGCTGATGATGGTGATGAAGAATCTGACAGGTCAAAATCTGAAGTGAATGATCAAGATGATGAGGAGAGTGCAGAGCAGGAGGAAGAGGAGGAGGAGGAGGATGATGATGAAGACTGA 510 0.4667 MKAAKGKGAARRDTKEALKPAEDRKIGKRKAAVKAEKSSKRATTKDKKAKKDPNKPKRPPSAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEAEKAPYEAKAAKKKAEYEKIMNAYNKKQESTADDGDEESDRSKSEVNDQDDEESAEQEEEEEEEDDDED* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1003 169 MobiDBLite consensus disorder prediction 95 110 - -
Vvi8g1003 169 MobiDBLite consensus disorder prediction 1 61 - -
Vvi8g1003 169 MobiDBLite consensus disorder prediction 123 148 - -
Vvi8g1003 169 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 56 125 IPR009071 -
Vvi8g1003 169 SMART hmgende2 55 126 IPR009071 -
Vvi8g1003 169 SUPERFAMILY HMG-box 43 126 IPR036910 -
Vvi8g1003 169 Gene3D High mobility group box domain 39 141 IPR036910 -
Vvi8g1003 169 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 159 IPR031061 -
Vvi8g1003 169 MobiDBLite consensus disorder prediction 88 110 - -
Vvi8g1003 169 MobiDBLite consensus disorder prediction 123 169 - -
Vvi8g1003 169 MobiDBLite consensus disorder prediction 149 169 - -
Vvi8g1003 169 MobiDBLite consensus disorder prediction 1 57 - -
Vvi8g1003 169 Pfam HMG (high mobility group) box 56 125 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1003 Vvi-Chr8 16235530 16238303 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vvi8g1003 HMG_box 6.2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1003 K25507 - vvi:100256381 234.187