LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g1002	ATGGATACGCTCCTCCAATCCAACGGCCACCAAGCCTCACCCTGGATATACCACAAAGCCTTCACCAAACCAAATATATCCCCAGTCGAATCCTCACACCACCACAATTCCATTCTCACTCTCTCCAACATCTCCACACCCGCCACTCCTTACACAACAGCCATGGCAACCACCACTGCCGCCGCCGCCGCCGCTACGTCCTCATTCATGGGAACACGCCTTCCCGACGTCCACTCAAACACCGGCCGCGTCCAAGCCCGATTCGGGTTCGGTCGTAAGAAAGCGCCCGCAAAGAAGGCCGCGAAGCGGGTGTCCGATCGCCCGCTATGGTTCCCGGGAGCCGTAGCTCCAGAGTGGCTGGATGGGACCTTGGTTGGGGACTACGGATTTGACCCCTTCGGTTTGGGCAAGCCCGCCGAGTACTTGCAGTACGATTACGACTCCTTGGACCAGAACTTGGCCAAGAACATCGCCGGAGACGTCATCGGAACCAGGTTCGAGGGCGGCGAGGTGAAGTCGACCCCGTTCCAGCCTTACACCGAGGTTTTTGGGCTGCAGCGGTTCCGTGAGTGCGAGCTCATTCATGGGAGGTGGGCCATGTTGGCCACACTCGGTGCTCTCGCCGTGGAGTCACTCACCGGAGTCACATGGCAAGATGCCGGAAAGGTGGAGCTGATCGAAGGATCATCGTATCTAGGGCAACCACTTCCATTCTCCATGACCACATTGATCTGGATTGAAGTTCTGGTGATTGGGTACATTGAGTTCCAGAGGAATGCAGAGCTGGACCCAGAAAAGAGGCTGTACCCAGGTGGAAAGTTCTTCGACCCATTGGGATTGGCAGCTGACCCGGAGAAGAAGGCGGTCCTCCAACTGGCGGAGATCAAGCACGCTCGCCTTGCCATGATTGGTTTCCTGGGATTCGCCGTCCAGGCAGCCGTCACCGGAAAAGGCCCTCTCAACAACTGGGCCACCCATTTGAGCGACCCACTTCACACAACCATTATCGACAACGTTTTCTACTCTTAA	1029	0.5695	MDTLLQSNGHQASPWIYHKAFTKPNISPVESSHHHNSILTLSNISTPATPYTTAMATTTAAAAAATSSFMGTRLPDVHSNTGRVQARFGFGRKKAPAKKAAKRVSDRPLWFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMIGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNVFYS*	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g1002	342	Pfam	Chlorophyll A-B binding protein	116	312	IPR022796	-
	Vvi8g1002	342	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	56	337	IPR001344	GO:0009765\|GO:0016020
	Vvi8g1002	342	Gene3D	Chlorophyll a/b binding protein domain	110	341	-	-
	Vvi8g1002	342	FunFam	Chlorophyll a-b binding protein, chloroplastic	161	341	-	-
	Vvi8g1002	342	SUPERFAMILY	Chlorophyll a-b binding protein	101	339	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g1002	Vvi-Chr8	16224845	16225959	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g1002	70	338	Chloroplast and Mitochondria Gene Families	AT3G08940	83.333	1.76e-168	469

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g1002	K08915		-	vvi:100266604	558.91