Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1001 ATGGGAACTCGAAACTTTTTATGGGACTTTGGTAAGAAGTGTTTCACATTTGGGCTCATAGGCCTTACCATTTCAGATCGATATGCCAGTATTGCCCATGTGCAAGGCCTCTCCATGTATCCCACATTCAATCCCAATGCTAGAACTTTTATGGGATCATTGACTGATGATTATGTCTTGTTGGAGAAATTTTGCCTTGAAAAGTACAAGTTTTCTCATGGTGATGTGATAGCATTCCGCTCCCCAAATAATCACCGTGAGAAACAAATAAAGAGAATAATTGCCTTGCCAGGGGATTGGATCACAGCACCACATTCATATGATGCCTTGAGGATTCCAGAGGGGCATTGTTGGGTTGAGGGAGACAATTCTGCTTCTAGTTTGGATTCAAGATCTTTTGGCCCAGTTCCTTTGGGTTTAGCTTGCGGAAGGGCCACCCACATTGTGTGGCCTCCTCAGCGAATAGGGGAAGTTGAGAGAAGAATCCCTCATGACAGAATTTCTTTCGGCTAA 513 0.4386 MGTRNFLWDFGKKCFTFGLIGLTISDRYASIAHVQGLSMYPTFNPNARTFMGSLTDDYVLLEKFCLEKYKFSHGDVIAFRSPNNHREKQIKRIIALPGDWITAPHSYDALRIPEGHCWVEGDNSASSLDSRSFGPVPLGLACGRATHIVWPPQRIGEVERRIPHDRISFG* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1001 170 Gene3D Umud Fragment, subunit A 25 167 - -
Vvi8g1001 170 FunFam Mitochondrial inner membrane protease subunit 25 163 - -
Vvi8g1001 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi8g1001 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi8g1001 170 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi8g1001 170 Pfam Signal peptidase, peptidase S26 111 150 IPR019533 GO:0004252|GO:0006465
Vvi8g1001 170 Pfam Signal peptidase, peptidase S26 9 103 IPR019533 GO:0004252|GO:0006465
Vvi8g1001 170 CDD S26_SPase_I 30 145 IPR019533 GO:0004252|GO:0006465
Vvi8g1001 170 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 168 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Vvi8g1001 170 SUPERFAMILY LexA/Signal peptidase 30 158 IPR036286 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1001 39 156 MADS-box Gene Family AT1G29960 35.484 1.87e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1001 K09648 - vvi:100244265 362.459