Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0998 ATGGGTCTTAACTGTTTTGGTGCATTTGAATGGTGTAAAGGGAAGAAGAGTCTCAGGGAGCCAGAGGCAGAAGAGATTGCTACAAACAATGTGAGGCTCTTCTCTTATAATTCACTGAGATCAGCTACAAATAACTTCCATCCATCAAGCAGAGTAGGTGGAGGTGGTTTCGGAGTTGTGTATAGGGGCGTTTTAAGGGATGGTACTCAAGTTGCTATCAAGTGTCTTTCTGCTGAATCTAAACAAGGAACACAAGAATTCTTAACAGAGATTAACATGATATCAAATATCCGACATCCCAACCTTGTTGAACTCATTGGGTGTTGCATTGAAGGCAGTAATCGGATATTGGTGTATGAATATCTGGAGAACAATAGCATTGCAAGCATAATACTTGGTTCAAAAGGTAAACATGTGATTCTGGATTGGCCTACAAGAGTTTCTATCTGCATGGGTACAGCCTCTGGTCTTGCATATCTTCATGAGGAAGCTGAACCACATATTGTCCACAGAGATATTAAGGCTAGTAATGTACTTCTTGATGGAAGCTTTCTTCCTAAAATTGGAGATTTTGGTTTGGCAAAACTTTTCCCGGACAATGTCACTCATGTTAGCACTCGAGTAGCAGGGACAGTGGGATATCTGGCCCCAGAGTATGCCTTGTTGGGACAGCTTACTAAAAAGGCAGATGTATACAGTTTTGGGGTGCTTATGCTTGAAATAATTAGTGGCAGAAGTAGTAGTAAAGCAGCATTTGGAGAGGAACTATTGGTTCTGGTAGAATGGACATGGAAGCTGAAGGAAGAAGAAAGACTTCTGGAAATTGTTGATCCAGAACTGACTGATTATCCAGAGGACGAGATGATGCGCTTCATTAAGGTTGCGCTTTTTTGCACTCAAGCTGCTTCACACCAAAGACCCAACATGAAGCTAGTGGTGGATATGCTGTCCAAGGATGTTATTCTCAATGAGAAGGTACTAACACGGCCAGGGGTGTACAAGGGCCGGCCAACTCATCATGTGGAAAGTAGTCCACAGGAGTCATCATCTTCTCAGGGAAATAAAGGCAAGCAATCAATAAATCCTTCTGTGTCTTCAACCAGTTTAGGCAGCCAGAGTGTGACGCAAATGCTTCCCAGGTGA 1143 0.4278 MGLNCFGAFEWCKGKKSLREPEAEEIATNNVRLFSYNSLRSATNNFHPSSRVGGGGFGVVYRGVLRDGTQVAIKCLSAESKQGTQEFLTEINMISNIRHPNLVELIGCCIEGSNRILVYEYLENNSIASIILGSKGKHVILDWPTRVSICMGTASGLAYLHEEAEPHIVHRDIKASNVLLDGSFLPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIISGRSSSKAAFGEELLVLVEWTWKLKEEERLLEIVDPELTDYPEDEMMRFIKVALFCTQAASHQRPNMKLVVDMLSKDVILNEKVLTRPGVYKGRPTHHVESSPQESSSSQGNKGKQSINPSVSSTSLGSQSVTQMLPR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0998 380 MobiDBLite consensus disorder prediction 342 380 - -
Vvi8g0998 380 Pfam Protein tyrosine and serine/threonine kinase 50 315 IPR001245 GO:0004672|GO:0006468
Vvi8g0998 380 SUPERFAMILY Protein kinase-like (PK-like) 24 316 IPR011009 -
Vvi8g0998 380 SMART serkin_6 46 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0998 380 MobiDBLite consensus disorder prediction 331 380 - -
Vvi8g0998 380 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Vvi8g0998 380 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 352 - -
Vvi8g0998 380 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Vvi8g0998 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vvi8g0998 380 CDD STKc_IRAK 65 318 - -
Vvi8g0998 380 FunFam cold-responsive protein kinase 1 17 121 - -
Vvi8g0998 380 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Vvi8g0998 380 Gene3D Transferase(Phosphotransferase) domain 1 122 327 - -
Vvi8g0998 380 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0998 Vvi-Chr8 16186627 16192127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0998 34 329 Receptor kinase-like Gene Family AT1G53430 54.545 8.36e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi8g0998 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0998 - - vvi:100266670 732.25