Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0994 ATGCTACTCTCTCTTCAAGACAATACTTTGATTCCATTTCGCTCATTTATCTTCCATTCAATTCTTGTACCATACACCATCATCTTCCTCCATTCACCATCTCCAACCACTTCATCCACCATTTTGTATGGCAACGAGACTGATAGGCTGGCCTTACTAGCCATCAAAGCACAGATAACCCAAGACCCACTTGGAATCACCACTTCATGGAACGATTCTGTCCATTTCTGCAACTGGACTGGTGTCACATGCGGACACCGTCACCAGCGAGTTAACACCTTGAACCTCAACTCCCTTCACTTGGTGGGGTCTCTATCTCCTTCTATAGGGAACCTCACCTTCCTTACCGGTCTCAACCTCGAACTCAACAACTTCCATGGCCAAATCCCACAAGAACTTGGGCGTCTGTCCAGACTCAGAGCTCTTAACTTGACCAACAACTCCTTCTCCGGAGAGATTCCTGCCAATCTCTCCCGCTGCTCTAACCTCGTTTATTTTCGTCTGGGCTTCAACAACTTAATTGGGAGGATCCCATCTTGGCTTGGCTCATATCCAAAGGTTGTGAGGATGCAACTTCACTACAACAATCTGACCGGGCCAGTCCCAGATTCTTTAGGCAACCTCACTAGCATTAAATCTCTGTCTTTTGCAGTCAATCACTTGGAGGGAAGCATACCACAAGCATTAGGCCAGTTGCAGACTTTAGAGTTTATGGGATTGGGCATGAATGGATTCTCTGGTATCATCCCTTCCTCAGTTTACAATATGTCATCATTGGAAGTATTTTCTTTGCCATATAATAAACTTTATGGTAGTTTACCCTGGGACCTGGCCTTCACTCTTCCTAATCTCCAAGTTTTAAATATTGGCAATAATGACTTTACTGGTTCCCTACCCTCATCATTATCAAATGCCTCTAACCTTCTTGAATTCGATATCACCATGAGTAACTTTACTGGGAAAGTTTCAATCGACTTTGGAGGCATGCCTAATCTTTGGGGACTGTTTCTTGCTTCCAACCCTCTGGGAAAAGGAGAGGCCGATGATTTGAGTTTCTTGAACTCTTTAATGAAATGCAGGGCTTTGAAGGTGTTGGATCTCAGTGGTAGTCAATTTGGAGGGGTGTTGCCGAATTCTATAGCCAACCTCTCAACCCAACTTATGAAATTAAAATTGGACAACAATCAGTTGTCGGGAACAATTCCTCCAGGGATTGGGAACCTGGTTAATCTGACTGACTTAATATTAGCAAACAATGATTTCACAGGGAGCATTCCTGTCCTTATTGGGAACCTTCAGATGTTAGGTCGAATAGATTTGTCTAGAAATCAGTTATCGGGTCATATTCCATCCTCACTAGGAAACATCACACGATTGTATTCCCTTCATCTTCAAAACAATCACTTAAGCGGGAAAATTCCTTCTAGTTTTGGGAATCTTTTGTACCTGCAAGAGCTAGACCTTTCTTACAACTCTCTCAATGGTACTATACCTGAAAAGGTTATGGATCTTGTTTCCCTTACGATTTCCCTTAATCTAGCTAGAAATCAATTGACTGGTTTGCTACCGTCCGAAGTGAGAAAACTGAAAAATCTGGGGCACTTGGACGTTTCTGAGAATAAGTTGTCTGGTGAAATTCCTGATGGCCTTGGCAGTTGTTTAACCTTGGAGCACCTTCATATGGAAGGTAACTTCTTTAAAGGTTCCATTCCTCCATCTTTTATTTCTTTGAGAGGTCTCCTGGACTTGGATCTCTCACGCAATAACCTTTCTGGCCAAATTCCTGAATTTCTTCAGCAACTTTCCCTCAGCAATTTGAACCTGTCTTTCAACAATTTTGAAGGCCAGCTACCAACCAAAGGGGTCTTCAATAATGCAACTTCCACTTCAGTAGCTGGGAATAATAAGCTTTGTGGGGGTATACCTGAATTACATTTGCCTGCATGCCCTGTCACTAAGCCAAAAACAGGAGAATCGAAGCGCGGACTCAAGTTGATGATCGGATTACTTACTGGCTTTCTGGGATTAGTTTTGATAATGTCTCTTCTAGTTATCAATCGGCTGAGAAGAGTAAAGAGAGAGCCTTCTCAAACATCTGCGTCATCCAAGGATTTGATCTTGAATGTGTCCTATGATGGTCTTTTCAAAGCAACTGGAGGATTTTCTTCTGCCAACTTGATCGGTACAGGTGGCTTTGGTTCTGTGTACAAAGGAATTCTGGGTCAAGATGAGACAGTGGTTGCAGTTAAGGTAATACAGCTACATCAGCGTGGAGCTGTTAAGAGCTTCAAGGCAGAGTGCGAGGCCTTGAGAAACATTAGGCATCGGAATCTCGTCAAAGTCTTAACCACTTGCTCAAGTGTTGATTACCAAGGCAATGATTTCAAAGCTCTAGTCTATGAGTTCATGCCCAATGGGAGTTTGGAAAATTGGCTGCACCCAGTCCCAACACCAGATGAAATAAATGATGTCCTTCGGATTTTAAGCCTTCCCCAAAGATTGAACATTGCCATTGATGTGGCTTCCGCACTGGATTATCTTCATCACCATTGCCATAAGCCCATTGTTCATTGTGATTTGAAGCCAAGCAACATTCTTCTTGACAATGACATGACTGCTCATGTGGGTGATTTCGGGCTAGCGAGATTCATTCCAGAAGCCGCAGGTAGATCTCACCCCAGTCAGAGCAGCTCTATTGGATTGAAGGGAACCATTGGTTATGCAGCACCAGAGTATGGAATGGGAACTAAGGTTTCAGCCCTTGGTGACACATACAGCTATGGGATTCTCCTATTGGAGATGTTTACCGGGAAGAGGCCTACTGAGAGCATGTTCAGTGATCAACTGAATCTCCATAATTTTGTGAAGATGGCATTGCCTGAACGAATAGCTGACATTATAGACCCATTTTTCCTCTCTAGTGAAGCAAAAGAGGAGGAAACAACTGCCGCAGATAGTTCTAATCTGGCACATATGAAAAGAGAGAAAATGCATGAGTGCTTGATCTCAATACTTAGAATTGGAGTTTCTTGTTCACTGGAATCTCCCAGGGAGCGAATGGCCATTACAGAAGCTATCAAAGAACTGCAACTTATCAGAAAAATTCTTCTTGGAAATGGGGTTAGCTTTGGCGCAAGCACTGGTGTTATCAACAAAAAAACCATACCTATTTTGAAGTTTATAACTGATGCCCCTCTCAGGGCCATGAGCTCGTGGAATGATTCTCTCCACTTCTGCCAATGGCAAGGCGTGTCTTGCAGTGGCAGGCATCAAAGAGTCACCGTCTTAAATTTGCATTCATTGGGTCTGGTGGGTTCTATCCCTCCTCTAATTGGAAACCTTAGTTTCCTCAGAACCATCAATCTATCCAACAACAGTTTTCAAGGTGAGGTCCCTCCTGTAGTCAGGATGCAGATTCTAAACTTGACAAATAACTGGTTGGAAGGACAAATCCCAGCTAACCTTTCTCTATGTTCTAATATGAGAATCCTTGGCCTGGGCAACAACAATTTCTGGGGAGAAGTTCCTTCTGAGCTCGGCTCCTTATCCAACATGCTGCAACTTTTTATTGATTACAACAGTTTGACGGGTACCATAGCACCTACTTTTGGGAACTTGTCATCTCTCAGAGTTCTTGTTGCAGCTTCCAATGAGTTGAACGGAAGTATCCCACATTCACTGGGTCGCCTACAAAGCTTAGTGACGCTTCTTCGGCTCTTTTCTGTCCACGTAAGTAGGCTTAGTGGACCCATTCCGGTATCATTATCAAATACATCAAATCTTGAAATACTTGACCTTTCATCGAATAAATTCTGGTATGCAAATCAAATCTCTGGAAACATCCCAACAGGCATTGGAAATCTCGCAAACTTAATTGCATTAGATATGCACAAAAATCAATTCACAGGAAGTATTCCAACCTCCAATGGGAATCTTCACAAGCTAGAAGAAGTGGGTTTCGATAAAAATAAGTTGTCAGGGGTAATCCCTTCCTCTATCGGAAACTTAACATTGTTGAACCAGCTCTGGTTAGAGGAAAATAATTTTCAGGGAAGTATACCTTCAACTCTTGGAAATTGCCACAATTTGATATTGTTGCATCTTTATGGCAATAACCTAAGTGGTGACATACCCCGAGAAGTTATTGGCCTATCATCTTTAGCGAAATCCCTCAACCTAGCTCGAAATAGTCTCAGTGGTTTACTACCCTGGGAAGTGGGTAACTTGAGAAACCTTGTTGAATTGGACATTTCCCAAAACCAGTTATCTGGTGATATTCCTAGCAGTCTTGGCAGTTGTATTAGATTGGAACGCCTTTATATGTATGATAATTCCTTTGGTGGGGACATCCCACAGTCGTTGAATACTCTGAGAGGTCTCGAAGAGCTAGATCTTTCACACAACAACCTGTCGGGTGAAATTCCAAGATACTTGGCTACTATTCCCTTGAGGAATTTGAACCTTTCTTTGAATGATTTCGAAGGTGAGATACCAGTAGATGGAGTTTTCAGAAATGCAAGTGCAATTTCAATTGCTGGAAATGACAGGCTTTGTGGGGGTATACCTGAACTACAGTTGCCAAGATGCTCTAAAGACCAGAAGAGAAAGCAGAAAATGTCTCTCACCCTCAAATTAACAATCCCTATAGGACTTTCGGGAATAATTTTGATGTCCTGTATAATCCTTCGTCGGCTTAAAAAAGTGAGCAAAGGCCAACCCTCGGAATCTCTGTTGCAGGACCGATTTATGAATATTTCTTATGGGCTGCTTGTCAAAGCAACAGATGGATACTCTTCAGCCCATTTGATTGGTACAAGAAGCTTAGGCTCAGTATACAAGGGAATTCTTCATCCAAACGAAACAGTCATTGCAGTGAAGGTATTCAACCTTCAGAACAGAGGAGCTTCCAAGAGTTTCATGGCCGAGTGCGAAGCTTTGAGAAACATTCGGCATCGGAATCTTGTCAAGATCATAACTGCTTGCTCAAGCGTTGACTTTCATGGTAACGACTTCAAAGCCCTAGTTTATGAATACATGCCAAATGGAAGCCTCGAGACTTGGTTGCATCAGTTTGTCCCAGAAGGGAATGCACATGGGCAGAGGAGTCTAAACCTTCTTCAGCGATTAAATATAGCAATTGATGTGGGTTCAGCCTTGGATTATCTTCATAACCAATGCCAAGATCCAATCATACATTGTGATATAAAACCAAGTAACGTTCTTCTAGACAATGATAAGAATGCTCATGTGGGTGATTTTGGTCTAGCAAGGTTCCTTCATCATCACATCAATGAAAATTCTCATATTCAGACCAGCTCAGTTGTTTTAAAATGA 5334 0.4248 MLLSLQDNTLIPFRSFIFHSILVPYTIIFLHSPSPTTSSTILYGNETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGSLSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDLSRNNLSGQIPEFLQQLSLSNLNLSFNNFEGQLPTKGVFNNATSTSVAGNNKLCGGIPELHLPACPVTKPKTGESKRGLKLMIGLLTGFLGLVLIMSLLVINRLRRVKREPSQTSASSKDLILNVSYDGLFKATGGFSSANLIGTGGFGSVYKGILGQDETVVAVKVIQLHQRGAVKSFKAECEALRNIRHRNLVKVLTTCSSVDYQGNDFKALVYEFMPNGSLENWLHPVPTPDEINDVLRILSLPQRLNIAIDVASALDYLHHHCHKPIVHCDLKPSNILLDNDMTAHVGDFGLARFIPEAAGRSHPSQSSSIGLKGTIGYAAPEYGMGTKVSALGDTYSYGILLLEMFTGKRPTESMFSDQLNLHNFVKMALPERIADIIDPFFLSSEAKEEETTAADSSNLAHMKREKMHECLISILRIGVSCSLESPRERMAITEAIKELQLIRKILLGNGVSFGASTGVINKKTIPILKFITDAPLRAMSSWNDSLHFCQWQGVSCSGRHQRVTVLNLHSLGLVGSIPPLIGNLSFLRTINLSNNSFQGEVPPVVRMQILNLTNNWLEGQIPANLSLCSNMRILGLGNNNFWGEVPSELGSLSNMLQLFIDYNSLTGTIAPTFGNLSSLRVLVAASNELNGSIPHSLGRLQSLVTLLRLFSVHVSRLSGPIPVSLSNTSNLEILDLSSNKFWYANQISGNIPTGIGNLANLIALDMHKNQFTGSIPTSNGNLHKLEEVGFDKNKLSGVIPSSIGNLTLLNQLWLEENNFQGSIPSTLGNCHNLILLHLYGNNLSGDIPREVIGLSSLAKSLNLARNSLSGLLPWEVGNLRNLVELDISQNQLSGDIPSSLGSCIRLERLYMYDNSFGGDIPQSLNTLRGLEELDLSHNNLSGEIPRYLATIPLRNLNLSLNDFEGEIPVDGVFRNASAISIAGNDRLCGGIPELQLPRCSKDQKRKQKMSLTLKLTIPIGLSGIILMSCIILRRLKKVSKGQPSESLLQDRFMNISYGLLVKATDGYSSAHLIGTRSLGSVYKGILHPNETVIAVKVFNLQNRGASKSFMAECEALRNIRHRNLVKIITACSSVDFHGNDFKALVYEYMPNGSLETWLHQFVPEGNAHGQRSLNLLQRLNIAIDVGSALDYLHNQCQDPIIHCDIKPSNVLLDNDKNAHVGDFGLARFLHHHINENSHIQTSSVVLK* 1778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0994 1777 Pfam Leucine Rich Repeat 1411 1433 IPR001611 GO:0005515
Vvi8g0994 1777 Pfam Leucine Rich Repeat 1460 1478 IPR001611 GO:0005515
Vvi8g0994 1777 Pfam Leucine Rich Repeat 362 383 IPR001611 GO:0005515
Vvi8g0994 1777 Pfam Leucine Rich Repeat 283 304 IPR001611 GO:0005515
Vvi8g0994 1777 SMART LRR_typ_2 504 528 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 1206 1230 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 577 601 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 1409 1433 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 281 304 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 432 456 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 385 408 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 529 553 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 1457 1481 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 136 160 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 1384 1408 IPR003591 -
Vvi8g0994 1777 SMART LRR_typ_2 1336 1360 IPR003591 -
Vvi8g0994 1777 CDD STKc_IRAK 727 1032 - -
Vvi8g0994 1777 Gene3D Ribonuclease Inhibitor 1106 1273 IPR032675 -
Vvi8g0994 1777 Gene3D Ribonuclease Inhibitor 1052 1105 IPR032675 -
Vvi8g0994 1777 Gene3D Ribonuclease Inhibitor 1274 1538 IPR032675 -
Vvi8g0994 1777 Gene3D Ribonuclease Inhibitor 322 650 IPR032675 -
Vvi8g0994 1777 SUPERFAMILY L domain-like 1275 1519 - -
Vvi8g0994 1777 PANTHER OS04G0122200 PROTEIN 118 227 - -
Vvi8g0994 1777 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1152 1240 - -
Vvi8g0994 1777 SUPERFAMILY L domain-like 1059 1271 - -
Vvi8g0994 1777 ProSiteProfiles Protein kinase domain profile. 721 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0994 1777 Gene3D Ribonuclease Inhibitor 44 321 IPR032675 -
Vvi8g0994 1777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 855 867 IPR008271 GO:0004672|GO:0006468
Vvi8g0994 1777 ProSitePatterns Protein kinases ATP-binding region signature. 727 750 IPR017441 GO:0005524
Vvi8g0994 1777 SUPERFAMILY Protein kinase-like (PK-like) 699 1030 IPR011009 -
Vvi8g0994 1777 SUPERFAMILY Protein kinase-like (PK-like) 1576 1765 IPR011009 -
Vvi8g0994 1777 Gene3D Phosphorylase Kinase; domain 1 1559 1678 - -
Vvi8g0994 1777 Gene3D Phosphorylase Kinase; domain 1 683 802 - -
Vvi8g0994 1777 FunFam LRR receptor-like serine/threonine-protein kinase EFR 352 655 - -
Vvi8g0994 1777 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 85 351 - -
Vvi8g0994 1777 Pfam Protein kinase domain 1598 1771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0994 1777 Pfam Protein kinase domain 723 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0994 1777 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1568 1678 - -
Vvi8g0994 1777 SMART serkin_6 721 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0994 1777 SUPERFAMILY L domain-like 385 639 - -
Vvi8g0994 1777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1730 1742 IPR008271 GO:0004672|GO:0006468
Vvi8g0994 1777 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1272 1535 - -
Vvi8g0994 1777 Pfam Leucine rich repeat 458 518 IPR001611 GO:0005515
Vvi8g0994 1777 Pfam Leucine rich repeat N-terminal domain 1062 1087 IPR013210 -
Vvi8g0994 1777 Pfam Leucine rich repeat N-terminal domain 46 84 IPR013210 -
Vvi8g0994 1777 ProSiteProfiles Protein kinase domain profile. 1597 1777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0994 1777 Gene3D Transferase(Phosphotransferase) domain 1 803 1037 - -
Vvi8g0994 1777 Gene3D Transferase(Phosphotransferase) domain 1 1679 1775 - -
Vvi8g0994 1777 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 803 1040 - -
Vvi8g0994 1777 SUPERFAMILY L domain-like 46 342 - -
Vvi8g0994 1777 FunFam LRR receptor-like serine/threonine-protein kinase EFR 692 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0994 Vvi-Chr8 16147769 16154624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0994 1096 1777 Receptor kinase-like Gene Family AT3G47570 43.034 3.71e-162 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi8g0994 Pkinase 8.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0994 - - vvi:100259715 2041.54