Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0980 ATGGACGTGATTAAAACGCAGCAGATATCATCCAGACCGATCGAGAAGGTCATAGTCCATCCTCTGGTGCTTCTCAGCATCGTCGACAACTACAACCGAGTCGCCAAAGACACTCGAAAACGAGTCATCGGAGTTCTACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATGCCAAGGAGCACGTGGTTGGATGGTACAGCACAGGACCAAAACTGCGGGAGAATGACCTAGATATTCACGGACTGTTCCATGACTATGTTCCCAATCCTGTCTTAGTCATAATTGATGTCCAACCAAAGGAGCTAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAAGTGAAAGAGAATGCTACCCAGAAAAGCCAGAAGGTTTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGGTCACTGGAAAACTAGCAGCCTTGAAGGGTTTGGATGCACGACTGAGAGAAATACGTGGTTATCTTGATCTTGTGGTTGATGGAAAGCTTCCTCTAAATCATGAGATTCTTTACCATCTCCAGGATGTTTTCAACTTGCTTCCAAATCTCAATGTTGCTGAGTTAATCAAGGCATTTGCAGTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCATCCGAAGTGTTATAGCTCTCCACAACTTGATCAATAACAAGATGCTTAACAAAGAGCATGAGAAAGCTGAGGATGCAAAGCCAGCAGCCGTCCCGGCCGTTGCTGGAAGCTGA 933 0.4362 MDVIKTQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVIGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTGKLAALKGLDARLREIRGYLDLVVDGKLPLNHEILYHLQDVFNLLPNLNVAELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDAKPAAVPAVAGS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0980 310 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 194 - -
Vvi8g0980 310 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Vvi8g0980 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Vvi8g0980 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi8g0980 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Vvi8g0980 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi8g0980 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 293 - -
Vvi8g0980 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0980 Vvi-Chr8 16035083 16039927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0980 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 30.342 4.50e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0980 K03038 - vvi:100247677 612.453