Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0974 ATGTATCGAGGAATTGAATTTCTCTCTCCGGCCTCATATCTTCAAAATTCGAATTGGTTGTTCAGTGAAAGTAATGGGACAAAATGGACCCACGAGGAGAACAAGCTGTTTGAGAATGCCCTCGCGTTGCACGACAAAGATACCCCGGATCGATGGCTGAAAGTGGCAGCCATGATCCCGGGGAAGACGGTGGAAGATGTAATAAAGCAGTATAAGGACTTGGAAGATGATATTAGTGACATAGAGGCAGGGTTGATCCCAATTCCTGGATACAGTACCAGTTCTTTCAAATTGGAGTGGAATAACAATCAAGGCTTTGATGGGTTGAAACAGTTCTACTTTCCTGGCGGAAAGAGGGGCTCTGCGACTCGGTCTACCGATCAAGAAAGGAAGAAAGGAGTGCCGTGGACCGAAGAAGAGCACAGGCAGTTTCTGATGGGTCTTAAGAAGTATGGAAAAGGTGACTGGAGAAACATCTCACGCAATTTTGTGACTACTAGGACTCCCACCCAGGTGGCTAGTCATGCTCAGAAGTACTTTATCAGGCAACTTTCAGTGGGGAAAGATAAGAGGAGATCTAGCATCCATGACATCACAACTGTAAATCTCACCGACTCTAAGTCTCCTTCCTCAGACAATGACAGACCTTCATCGCCTGATTGCTCTACCACAGTTATGCAGCTGCCACAGTACCCAAATATGGTTGGCACAGCCAAACCAATGCTTGACCAGAGACCGCCAAATCAAGGAGCAGCTATGGTTTTCAATCCTTCAAATGGCAATCCATTCTTAGCACCTCCTTGTGGGATTTCTTCAAATGGGCTTAAGCTGCATGAACAATTTCTGCATAGAGGTACTCTTAATGGACCTCAGTTTGTACCTCATAGTTCAATATTCCAGATGCCATCCACACAACAACAACAGCGTCTTCATGGATGA 939 0.4558 MYRGIEFLSPASYLQNSNWLFSESNGTKWTHEENKLFENALALHDKDTPDRWLKVAAMIPGKTVEDVIKQYKDLEDDISDIEAGLIPIPGYSTSSFKLEWNNNQGFDGLKQFYFPGGKRGSATRSTDQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSVGKDKRRSSIHDITTVNLTDSKSPSSDNDRPSSPDCSTTVMQLPQYPNMVGTAKPMLDQRPPNQGAAMVFNPSNGNPFLAPPCGISSNGLKLHEQFLHRGTLNGPQFVPHSSIFQMPSTQQQQRLHG* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0974 312 MobiDBLite consensus disorder prediction 197 225 - -
Vvi8g0974 312 MobiDBLite consensus disorder prediction 118 137 - -
Vvi8g0974 312 Gene3D - 134 186 - -
Vvi8g0974 312 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Vvi8g0974 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Vvi8g0974 312 ProSiteProfiles SANT domain profile. 24 72 IPR017884 -
Vvi8g0974 312 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Vvi8g0974 312 FunFam Transcription factor SRM1 21 88 - -
Vvi8g0974 312 SUPERFAMILY Homeodomain-like 27 80 IPR009057 -
Vvi8g0974 312 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 251 IPR043363 -
Vvi8g0974 312 Coils Coil 64 84 - -
Vvi8g0974 312 CDD SANT 135 180 IPR001005 -
Vvi8g0974 312 CDD SANT 28 74 IPR001005 -
Vvi8g0974 312 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Vvi8g0974 312 FunFam transcription factor MYB1R1 134 185 - -
Vvi8g0974 312 Gene3D - 21 88 - -
Vvi8g0974 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Vvi8g0974 312 MobiDBLite consensus disorder prediction 123 137 - -
Vvi8g0974 312 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Vvi8g0974 312 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Vvi8g0974 312 SMART sant 25 77 IPR001005 -
Vvi8g0974 312 SMART sant 132 182 IPR001005 -
Vvi8g0974 312 SUPERFAMILY Homeodomain-like 130 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0974 Vvi-Chr8 15993135 15994644 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi8g0974 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0974 - - vvi:100263069 639.032