Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0961 ATGCTTGTTGCAATGGACTTAAATGCCTCGCCGCTACCTGAAGAAGATGAAGAGACTTTTGAACGGCATATAGAAGAATACACTGCACCAGAAGAACATGTAGAGACTGCAGTTGAAATTTCGCGCCGGGAGCGCGAAGAAAGACGTAGGCGGCTGAAAAGAGAACGCCCAGATGACAGATCGGTGAATGGACCTTCTGTGCATGATCGACCGTTTCAAACAAGAAATCATAGATCACATGATAGAAATAAGCTCCCCCCTGGTTGGTTGGATTGCCCTGCATTTGGTCAGGAAATCAATTTCATTATTCCTTCTAAGGTGCCTCTCGGTGAATCCTTCAATGACCTTGTCGCTCCTGGTAAAAGATACTCTTCTAGACAAGTGATTCATCAACAGAGAGTTCTAGGAAGAAAACTTGGTTTAGTAATCGATCTGACCAACACCACTCGTTACTATCCATCATCAGATTGGGAGAGAGAAGGTATTAAGCATATCAAGATCGCATGCAAGGGGCGGGATTCTGTACCTGATAATGCAGCTGTAAACTCCTTTGTTTATGAAGTCTCTCAATTTCTTTCTCGTCAGAAACAAACAAAGAAGTATATTCTGGTACATTGTACCCATGGTCATAATCGCACAGGTTATATGATCGTTCATTATCTTATGCGGTCACAGTCAATGTCTGTCACTCAGGCAATAAAAATTTTTGCTGATGCACGTCCTCCAGGAATCTACAAACATGATTATATTGATGGACTGTATGCATTTTATCATGAAAGAAAGCCTGAATTGGTCATTTGTCCTCCAACTCCTGAGTGGAAGAGATCTTCAGATCTTGATCTCAATGGTGAAGCGATGCCTGATGATGATGATGATGGAGTCTCAGCGGCTCCTGGGCATGAAAAGCATGAGGTAGATGTAGTAATGACAAATGACGACAAAATAGGAGATGACATACCTCCTGAGCAGCAGAAGGCACTGCAGCAGTTCTGTTATCAATCACTTAAGTTGCCTGTTGGGGGGCATAGAGGACCCTCGCAATTCCCCGGGTCACACCCAGTTTCACTTAACAGGGATAATCTACAACTGTTAAGACAACGCTATTATTATGCCACATGGAAAGCTGATGGAACTCGATATATGATGCTAATAACTGTGGATGGGTGCTATTTAATTGATAGGACTTTTACATTTCGGAGGGTCCAGATGAGGTTTCCCTGCAAAATTACAAATGATGGTTTTGTCGAAAAGACTCATCATTTTACATTGCTTGATGGGGAGATGATAATCGATACCATGCCAGATTCACAGAAGCAGGAGAGGAGATACCTCATCTATGATCTGATGGCAATTAACCAAGTGTCAGTCATAGAGCGGCCCTTCTATGAAAGGTGGAAGATGCTAGAAAAAGAAGTGATTGAGCCTCGGAATTATGAACGCCAGAATGTTTACCAAAGTAGGAATCCTTATTACAGATATGACTTGGAACCATTCAGGGTGAGAAGGAAGGATTTTTGGTTGCTGTCTACTGTTACCAAGCTTCTAAAGGAATTCATTCCAAGACTTTCACATGATGCAGATGGTCTTATTTTTCAGGGTTGGGATGATCCTTATATTCCCCGTACACATGAAGGCCTCTTAAAGTGGAAATACGCTAACATGAACTCAGTCGACTTTCTATTTAAGATGAGTGCTGATAATCATCCACAGCTTTTTCTGAATGAACGAGGGAAAGAGAAACTGATGGAAGGGAACCGGGTTTCATTTAAAGATGGTTTAGATCCCTCTTCATATCATGGAAAAATTATCGAGTGTTCTTGGGATTTTGATGCAAGAGAATGGAGCTTTATGCGGGTCAGAATTGATAAATCAACCCCAAATGAGTTTGGAACATACATGAAGGTGATGCGAAGCATAAGGGACAATATTACAGAAGAAGTGCTGTTAACTGAGATTCGCGAAATAGTTCGCTTGCCTATGTATGCTGATAGGATATGGAATGATAGCAAAGCCCACCAGCATACAAATGCAGCACGACGTAGGTGA 2046 0.4194 MLVAMDLNASPLPEEDEETFERHIEEYTAPEEHVETAVEISRREREERRRRLKRERPDDRSVNGPSVHDRPFQTRNHRSHDRNKLPPGWLDCPAFGQEINFIIPSKVPLGESFNDLVAPGKRYSSRQVIHQQRVLGRKLGLVIDLTNTTRYYPSSDWEREGIKHIKIACKGRDSVPDNAAVNSFVYEVSQFLSRQKQTKKYILVHCTHGHNRTGYMIVHYLMRSQSMSVTQAIKIFADARPPGIYKHDYIDGLYAFYHERKPELVICPPTPEWKRSSDLDLNGEAMPDDDDDGVSAAPGHEKHEVDVVMTNDDKIGDDIPPEQQKALQQFCYQSLKLPVGGHRGPSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITVDGCYLIDRTFTFRRVQMRFPCKITNDGFVEKTHHFTLLDGEMIIDTMPDSQKQERRYLIYDLMAINQVSVIERPFYERWKMLEKEVIEPRNYERQNVYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDPYIPRTHEGLLKWKYANMNSVDFLFKMSADNHPQLFLNERGKEKLMEGNRVSFKDGLDPSSYHGKIIECSWDFDAREWSFMRVRIDKSTPNEFGTYMKVMRSIRDNITEEVLLTEIREIVRLPMYADRIWNDSKAHQHTNAARRR* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0961 681 Pfam mRNA capping enzyme, catalytic domain 352 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vvi8g0961 681 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 344 551 - -
Vvi8g0961 681 MobiDBLite consensus disorder prediction 1 20 - -
Vvi8g0961 681 Gene3D - 549 658 IPR012340 -
Vvi8g0961 681 CDD Adenylation_mRNA_capping 322 551 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vvi8g0961 681 CDD RNA_5'-triphosphatase 88 254 - -
Vvi8g0961 681 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 182 251 IPR000387 GO:0016311|GO:0016791
Vvi8g0961 681 ProSiteProfiles Dual specificity protein phosphatase domain profile. 112 263 IPR020422 GO:0006470|GO:0008138
Vvi8g0961 681 FunFam mRNA capping enzyme family protein 81 295 - -
Vvi8g0961 681 PANTHER MRNA-CAPPING ENZYME 80 663 - -
Vvi8g0961 681 FunFam mRNA capping enzyme, putative 310 548 - -
Vvi8g0961 681 MobiDBLite consensus disorder prediction 26 86 - -
Vvi8g0961 681 ProSitePatterns Tyrosine specific protein phosphatases active site. 204 214 IPR016130 GO:0016311|GO:0016791
Vvi8g0961 681 PIRSF mRNA_capping_HCE 72 681 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vvi8g0961 681 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 274 IPR029021 -
Vvi8g0961 681 SUPERFAMILY Nucleic acid-binding proteins 553 665 IPR012340 -
Vvi8g0961 681 MobiDBLite consensus disorder prediction 26 85 - -
Vvi8g0961 681 Pfam mRNA capping enzyme, C-terminal domain 554 649 IPR013846 -
Vvi8g0961 681 Pfam Dual specificity phosphatase, catalytic domain 138 257 IPR000340 GO:0008138|GO:0016311
Vvi8g0961 681 Gene3D DNA ligase/mRNA capping enzyme 304 548 - -
Vvi8g0961 681 SMART dsp_5 113 259 IPR020422 GO:0006470|GO:0008138
Vvi8g0961 681 FunFam mRNA capping enzyme family protein 549 658 - -
Vvi8g0961 681 Gene3D Protein tyrosine phosphatase superfamily 63 280 IPR029021 -
Vvi8g0961 681 MobiDBLite consensus disorder prediction 281 301 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0961 1 681 Protein tyrosine phosphatase (PTP) family AT3G09100 67.930 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0961 K13917 - vvi:100256199 1382.08