Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0955 ATGCTTCAAATCCGGCTTAGCAGGGACCCATCCCTGGGAAGTGGCAGTGGGTCAAAGCCTTTGCCGGTGGAAACTGTGACAGTTGCATGTCCTGACCACCTTGTCCTTGCAGACCTCCCTGTGGCAAAGAGCCTCGGTTCAATGACTGCTGCTTCCCTTGTTAAGACTGTAGGTCGGAGATCCCGTCGCCAGCTCGGTGAACGAGTTCATTTCTGTGTTCGATGTGATTTCCCCATTGCAATCTATGGACGCCTGATTCCATGTGAGCATGCCTTTTGTCTCGATTGTGCTAGGAGTGATTCTATCTGCTACCTTTGTGATGAACGCATTCAGAAGATTCAGACTATTAAAATGATGGAAGGGATCTTCATCTGTGCAGCCCCTCACTGTCTAAAGTCCTTCCTAAAGAGGGCTGAATTTGAGTCACATATTCATGAGAGCCATGCAGACCTTCTTCAACCAAACGCAGAGAAAGAAGATGGAAACGAGTCAGAAGCTCTGAGTGTCAAACAATCTACTGTTTCCGACTCCACAGCAAGAGCTCCATCGCGGCCAGTTTTCTCTCCTAGCTCAAGTTCCCAGCTTCATGATCGGGAAGACAAGGCTCGTCGCCAACAGCCTAGAGAACAACAACCACCTTCCAGGCCAATCATACAGCCAAAGCCACCACCTTTCTTTCATCCATCGGAGCTCCAACCAGATAACAACCGACCTCCCCAAGGTTTTGACAGGCCTGGTTTGCACCGCTTCCATCCACAGACATTTGACAATCAGGGTGGTCTGCAGCAAGAATCTGCCCAGTTTTCAGACAAGCAGCAAGGAATTTTATCTGAGTCTCCATATGCTGAATACCCTCCTCTGCATTCCCATCAACCACCCAATTTTGCAGTGCCACTTAATCCAAATCCACTGCTAACTCCCCCTCCGTTCAATTATCATCATTTTCCATCTGAGGGAGCTCAAACATTTTACAGCTCTCCACATGAGATGGCACGGCCTGATTCAGCACCAGATGTTGGAACAGAACAAGGGTCATTGTTGGGTTTCCCACCTGGTCCGGTAGGTGGTGTGAATTTCCCAGAAAGTTATCCTCGTCCCTGGAACAGCGGACCTGTGGGTGTGCCTTTTGAAGGTCCAACAGGGGGTCAACCAATTCCAGATGGTTTGGGAAATGCATCAGATCCTCAAGGGAGAGGTGCATTTTTTCAAGGTGATTATGGACGGAATCCTGGAAGTTTGCCTTCAAACCCTCCTCTTCCACCTTTGGCCAACAAGGGGATGGAACCAACACAGGGTAGTGCTGCAATGGATCCCAGGGATGGCAAGGGTATACTGGCACAACCACCCTTGCCACTCCCACCCCCACCCCCACCACCCCCTCACTTGTCACAGCTCAAAAGAGCTAAGTTCTTTTCTGGTGATACAAGCCGAGATGGACAGGGATTTGGATGGCAGCAGGAGAAGCATGATAGTTTTGGAAGTGGGCAGGACTAG 1494 0.4993 MLQIRLSRDPSLGSGSGSKPLPVETVTVACPDHLVLADLPVAKSLGSMTAASLVKTVGRRSRRQLGERVHFCVRCDFPIAIYGRLIPCEHAFCLDCARSDSICYLCDERIQKIQTIKMMEGIFICAAPHCLKSFLKRAEFESHIHESHADLLQPNAEKEDGNESEALSVKQSTVSDSTARAPSRPVFSPSSSSQLHDREDKARRQQPREQQPPSRPIIQPKPPPFFHPSELQPDNNRPPQGFDRPGLHRFHPQTFDNQGGLQQESAQFSDKQQGILSESPYAEYPPLHSHQPPNFAVPLNPNPLLTPPPFNYHHFPSEGAQTFYSSPHEMARPDSAPDVGTEQGSLLGFPPGPVGGVNFPESYPRPWNSGPVGVPFEGPTGGQPIPDGLGNASDPQGRGAFFQGDYGRNPGSLPSNPPLPPLANKGMEPTQGSAAMDPRDGKGILAQPPLPLPPPPPPPPHLSQLKRAKFFSGDTSRDGQGFGWQQEKHDSFGSGQD* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0955 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 447 463 - -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 194 208 - -
Vvi8g0955 497 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 255 272 - -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 150 272 - -
Vvi8g0955 497 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 166 193 - -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 213 229 - -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 281 300 - -
Vvi8g0955 497 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Vvi8g0955 497 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Vvi8g0955 497 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 486 IPR040383 GO:0016567|GO:0061630
Vvi8g0955 497 MobiDBLite consensus disorder prediction 150 165 - -
Vvi8g0955 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 361 497 - -
Vvi8g0955 497 MobiDBLite consensus disorder prediction 478 497 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0955 1 370 C2H2 Transcription Factor Family AT5G01160 51.309 4.51e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0955 K15685 - vvi:100244343 900.197