Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0938 ATGGAGGATATAACAGTGGTGGAAGGCGAAGGAGCCGACGGAGGAAGCCCCGGCGACGCTATGGTGGTAGGTGAGGGAGAGGGAAACGGCAAGGGAAGCGGAAGCAGCAGCCAGGCTGCGAGAGGGGACCGAGTTAAAGGGCCTTGGTCTCCTGAAGAGGACGCCATTCTGAGTCGACTGGTGAGTAAGTTCGGGGCCAGGAACTGGAGTCTGATCGCCCGTGGAATTGCTGGGAGATCCGGCAAGTCCTGCCGGCTGCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTGATGAGGAGGATCGTATCATAGTTGCTGCACATGCAATCCATGGAAACAAATGGGCATCAATTGCAAGGCTTCTTCAAGGGAGAACAGATAATGCAATTAAAAACCACTGGAATTCCACTCTGAGGCGCCGGTGTATGGAGATTGACAGGGCTAAGTTGGAATCTGGCAATATAGTGGAGGATGTTAGCTTGGACAAAACCAAAGCATCATCTGAAGAAACTATGTCATGTGGGGATGCCAATTCATCCAAATCCTTGGAAGGAAAAGATGTCAACTCTTCAGATAACATGGCTGATCAGAATGAAGAAAGGGCACAAATTGAGGGTCAATTTAGTCATGAAGCACAAGATCCACCTACCCTTTTCCGTCCTGTGGCACGTGTCAGTGCGTTTAATGTTTACAGTTCTCTTGATGGCCCAGAACATGCATTTCCATTTCCACGGCCAGTTCCTATGCAGGGGCCTTTGATTCAAGCATCAACACCTGATGCCGGGATCTGCAAATTGATTCAAGGAGATTCAGGTGAACAATTGGTGCCTCAACGATGTGGACATGGTTGCTGTGAGAGTCCTAGAGGTGGGAATCTTGGAAACTCTTTGTTGGGGCCTGAATTTGTGGAATTTTCAGAGCCTCCTCCATTTTCAAGTTTTGAGTTGGCTGCAATAGCCACTGATATTAGTAATATTGCTTGGCTCAAAAGTGGGTTGGAAAATAGTACAGTCAGAGTGATGGGAGATGCAGCTGGTAGGACAATGTCTCGTGGGTCTCAAGTGCAAATGGCACGGTTTGAAGAGAGTAGAAAGAATGACCATTTGCGATTTGAGGAGGGAAAGAACAAATTAATGGGCATGATGACTGATGTGCGGTCGACCCAGATTGGCAAACAATCTTTTTCAGTACCAGCTAAAGTTGGTGGCTTGAGTTGA 1233 0.4826 MEDITVVEGEGADGGSPGDAMVVGEGEGNGKGSGSSSQAARGDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWASIARLLQGRTDNAIKNHWNSTLRRRCMEIDRAKLESGNIVEDVSLDKTKASSEETMSCGDANSSKSLEGKDVNSSDNMADQNEERAQIEGQFSHEAQDPPTLFRPVARVSAFNVYSSLDGPEHAFPFPRPVPMQGPLIQASTPDAGICKLIQGDSGEQLVPQRCGHGCCESPRGGNLGNSLLGPEFVEFSEPPPFSSFELAAIATDISNIAWLKSGLENSTVRVMGDAAGRTMSRGSQVQMARFEESRKNDHLRFEEGKNKLMGMMTDVRSTQIGKQSFSVPAKVGGLS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0938 410 MobiDBLite consensus disorder prediction 169 202 - -
Vvi8g0938 410 Gene3D - 45 97 - -
Vvi8g0938 410 ProSiteProfiles Myb-like domain profile. 41 92 IPR001005 -
Vvi8g0938 410 FunFam MYB transcription factor 46 97 - -
Vvi8g0938 410 Pfam Myb-like DNA-binding domain 49 106 - -
Vvi8g0938 410 CDD SANT 100 143 IPR001005 -
Vvi8g0938 410 SUPERFAMILY Homeodomain-like 44 139 IPR009057 -
Vvi8g0938 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Vvi8g0938 410 MobiDBLite consensus disorder prediction 1 50 - -
Vvi8g0938 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 92 IPR017930 -
Vvi8g0938 410 SMART sant 97 145 IPR001005 -
Vvi8g0938 410 SMART sant 45 94 IPR001005 -
Vvi8g0938 410 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Vvi8g0938 410 CDD SANT 48 90 IPR001005 -
Vvi8g0938 410 PANTHER MYB PROTEIN-RELATED 46 191 - -
Vvi8g0938 410 MobiDBLite consensus disorder prediction 171 202 - -
Vvi8g0938 410 Gene3D - 99 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0938 Vvi-Chr8 15637561 15643945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0938 36 393 MYB Transcription Factor Family AT3G09230 50.000 8.62e-110 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi8g0938 Myb_DNA-bind_6 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0938 K09422 - vvi:100256309 793.882