Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0937 ATGTCAGCAGTAGAAATGTCCCACATCGATCTAGAACAAGGGGGTCACCGCCGTTCCTTCGGAGGAAGCGATGGAAGCGATGGAAGCGGCGACGGTAGCCTCTGTTTCTCTGATGCAGACGAAGGGTCGTGTTATTCTCTGTTCTATTCCACCGCCGGTGGATCCTATGATGAGTACAGCTTTGCCTGCGTCACGGATGCCGAGATTGGAGGGGTTTCGGATTCTAGGAGAGTCTCTTCCATGTCGGATTGCTCGGTGGAGGTCGAAACTGAAAACGGGGTTCCCGAAATCAAGGTGCATTTGGCTAAAGCAGAGAGAGATTGTAGAATTTGTCACCTGAGCTTAGAGAGTAGTAACTATGAGTCCGGGATTCCTATTGAATTGGGTTGTTCTTGTAAGGAGGATTTGGCTGCTGCCCACAAACATTGTGCTGAAGCCTGGTTCAAGATTAAGGGAAATAAGACTTGTGAAATCTGTAATTCGACTGCACGAAATGTTTTTAGTGCAAGCGAAATGGAGTTGACAGAGCATTCGAATGAAACCAGCAATAATGCCACAGTCACAGCCACAGCCACAGCCCCAGCCCCAGCTGCAGTCTCTACAACAGTGTCTGGTGCTGAGACCCGAAGCTTCTGGCATGGCCATCGCTTCCTAAATTTCCTGCTTGCTTGCATGGTGTTTGCTTTTGTCATATCTTGGCTCTTTCACTTCAACGTGCCATCATGA 726 0.489 MSAVEMSHIDLEQGGHRRSFGGSDGSDGSGDGSLCFSDADEGSCYSLFYSTAGGSYDEYSFACVTDAEIGGVSDSRRVSSMSDCSVEVETENGVPEIKVHLAKAERDCRICHLSLESSNYESGIPIELGCSCKEDLAAAHKHCAEAWFKIKGNKTCEICNSTARNVFSASEMELTEHSNETSNNATVTATATAPAPAAVSTTVSGAETRSFWHGHRFLNFLLACMVFAFVISWLFHFNVPS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0937 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 170 IPR013083 -
Vvi8g0937 241 SMART ringv_2 107 160 IPR011016 GO:0008270
Vvi8g0937 241 SUPERFAMILY RING/U-box 105 163 - -
Vvi8g0937 241 ProSiteProfiles Zinc finger RING-CH-type profile. 100 166 IPR011016 GO:0008270
Vvi8g0937 241 Pfam RING-variant domain 108 159 IPR011016 GO:0008270
Vvi8g0937 241 PANTHER ZINC FINGER, RING-CH-TYPE 23 240 - -
Vvi8g0937 241 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0937 Vvi-Chr8 15631645 15633830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0937 72 241 C3H Transcription Factor Family AT5G05830 61.765 1.01e-72 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0937 - - vvi:100252869 436.417