Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0936 ATGGGAGCCCGCTGCTCTAAATTCTCATTCTGCTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCGAGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTAGCTTGGACCAACTCAAAGCTGCCACGTCGGGGTTCTCCTCCGATAACATAGTGTCGGAGCACGGAGAAAAAGCTCCAAATATTGTTTACAAAGGGAAACTCGATGCTGACCGTTGGATCGCTGTTAAGCGGTTTAACAAGTTGGCCTGGCCTGATTCTCGTCAATTCGTTGAGGAAGCAAGATCCGTGGGAAATTTGAGGAATGAGAGATTAGCGAATTTGATTGGATGTTGCTGTGAAGGTGATGAGAGATTGCTCGTGGCAGAGTTTATGCCAAATGAAACTCTTGCGAAGCATCTTTTTCACTGGGAGACCCAGCCTATGAAATGGGCAATGAGATTGAGGGTAGCATTGTATTTAGCACAAGCTTTGGAATATTGCAGCAGTAAAGGACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAGGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGAGAACAGGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCATGCACTTGATCTGATTCGTGGCAAGAATTTTCTGATGTTGATGGACTCTTGTTTGGAGGGTCATTTCTCAAATGATGATGGTACTGAGTTAGTGCGGCTGGCTTCCCGCTGTTTGCAGTATGAAGCTCGTGAGAGACCAAATGCAAAGTCCCTTGTTACTGCTCTTATGTCTCTTCAGAAAGAAACAGAGGTTCCATCATACATCTTGATGGGTATCGCACATGACACTGCTTCCCCAGCAGAGCCATTGTCATTAACCCCTTTTGGTGAAGCTTGCTTGAGAATGGATCTCACTGCTATACATGAAATCTTGGACAAGATTGGATACAAGGATGATGAAGGGATTGCCAATGAGCTTTCATTTCAGATGTGGACCAATCAAATGCAGGAGACCTTGAATTCCAAGAAGCATGGAGATACCGCTTTCCGAGCTAAGGATTTCACAACTGCCATTGATTGCTACACCCAATTCATTGATGGCGGGACCATGGTATCCCCAACTGTGTATGCTAGGCGCTGCTTGTCCTACTTAATGAATGACATGCCCCAAGAAGCTCTTGGGGATGCCATGCAAGCTCAGGTGGTGTCCCCTGAGTGGGCCACTGCTTTCTATCTTCAAGCAGCTGCCCTCTTCAGTCTTGGGATGGATACTGATGCCCAAGAAACACTCAAAGATGGCACAAACTTGGAAGTCAAAAAGAGCAAAAATTGA 1476 0.4621 MGARCSKFSFCWWQSHLKPSVLDPSDLENGGKADRNSLPSFTEFSLDQLKAATSGFSSDNIVSEHGEKAPNIVYKGKLDADRWIAVKRFNKLAWPDSRQFVEEARSVGNLRNERLANLIGCCCEGDERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEARERPNAKSLVTALMSLQKETEVPSYILMGIAHDTASPAEPLSLTPFGEACLRMDLTAIHEILDKIGYKDDEGIANELSFQMWTNQMQETLNSKKHGDTAFRAKDFTTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPEWATAFYLQAAALFSLGMDTDAQETLKDGTNLEVKKSKN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0936 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Vvi8g0936 491 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0936 491 SUPERFAMILY TPR-like 388 486 IPR011990 GO:0005515
Vvi8g0936 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Vvi8g0936 491 Gene3D Tetratricopeptide repeat domain 384 491 IPR011990 GO:0005515
Vvi8g0936 491 SUPERFAMILY Protein kinase-like (PK-like) 37 320 IPR011009 -
Vvi8g0936 491 Pfam Protein tyrosine and serine/threonine kinase 73 310 IPR001245 GO:0004672|GO:0006468
Vvi8g0936 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Vvi8g0936 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Vvi8g0936 491 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Vvi8g0936 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 20 490 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0936 Vvi-Chr8 15623817 15630618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0936 44 310 Glycoside Hydrolase AT3G07070 35.254 2.23e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vvi8g0936 PK_Tyr_Ser-Thr 1.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0936 - - vvi:100261407 1001.12