Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0930 ATGACCGTACACGAAGATGCGGAACAGGAGCCTGTACCGCAGAAGAAGAAACCACTATCTGAGGCAGAGAAGAGGAAAAAGAAAATTGTGCCTGGAAGTTTGATGAAAGCAGTGATAAGGCCTGGAGGGGGCGACTCAACACCTTCAGATGGCGATCAGGTTATATATCATTGTACGGTTCGTACACTGGATGGTGTTGTTGTGGAATCTACCAGATCAGAATGTGGAGGCAAGGGTACCCCCATAAGACATGTTTTGGGTAAAAGCAAGATGATATTGGGATTGCTTGAAGGAATGCCCACAATGTTGAAGGGTGAAGTGGCAATGTTAAAGATGAAAGCAGAACTGCACTATGGTGAGGCTAATTGTCCTCTTATGGTTCCTGATAATTTTCCGAAGGATGATGAGCTTCATTTTGAGATTGAGATGTTGGACTTCTTTAAAGTCAAGGTCATCAGTGATGATTTGGGAGTGTTAAAGAAGGTAATAAATGAAGGGCAGGGTTGGGAATCACCACGGGAACCTTATGAAGTAAAAGCATGGATTTCCGCAAAGACTGGTGAGGGGAAAGAGATTCTATCACATACAAAAGGAGAACCGTATTTCTTTACTTTTGGAAAATCTGAGGTGCCTAAAGGTCTTGAGATGGGAACAGGAACAATGACACGGGGAGAGAAGGCTGTATTGTATGTTACCAATCAGTATATAACTCAATCTCCTCTCATGCCCATAATTGAAGGTGTTGAAGAAGTTCTTTTTGAAGTAGAGCTTGTCCACTTCATTCAGGTGCGGGACATGCTTGGAGATGGACGTCTGATAAAACGCCGCATTCATGATGGAAGGGGTGACTTTCCCATGGATTGCCCTCTTCATGACAGTCTACTACGTGTTCACTACAAGGGCATGCTTCTTAATGAAGAGAAGACTGTTTTCTATAACACTAGGGTTGATAACAATGGCCAGCCTTTGGAGTTTGGTTCTGGAGAAGGGCTTGTGCCTGAGGGGCTGGAAATGTGTGTTCGTCTTATGCTGCCAGGGGAGATAGCTCTTGTAACATGTCCTCCTGACTACGCATATGATAAGTTTCCCAGACCTGCTAATGTTCCTGAAGGTGCTCATGTTCAATGGGAAATTGAGCTTCTTGGTTTTGAGATGCCAAAGGACTGGACTGGTTTGAACTTTGAAGCCATAATGGATGAAGCAGACAAGATCAGAGGCACGGGGAACAGACTCTTCAAGGAAGGGAAGTTTGAGCTTGCCAAGGCAAAGTATGAGAAGGTGCTTCGTGAATTTAATCATGTTAATCCACAAGATGATGAGGAAGGGAAAGTGTTTCTCAATGCAAGAAATTCTTTACATCTAAATGTGGCTGCCTGCTATCTGAAAATGGGAGAATGCAGAAAGTCGATTGAGGCATGTAACAAGGTGTTAGATGCAAGCCCTGCACATGTCAAAGCTCTGTATCGTCGTGGAATGGCCTACATGTCTGCTGGAGATTTTGAGGAAGCTAGGAATGATTTCAAAATGATGATGAGCATTGATAAGTCATGTGAACCTGATGCCACTGCAGCTCTAGTTAAACTAAAGCAAAAGGAGCAGGAAGTTGAGAGGAAGGCTCGATCACAATTTAAAGGGCTGTTTGATAAGAAGCCAGGGGATATTGCTGAGGCTGGAGTTGACGATAGGGGAGATAAAAGGTTGGGTGAAAATGAGAAGAACGACGATAAGGAGGATTCTGATGGGGATAAGGAGTTTCAGGAAGCAGAAGATGCTCCACCTCCGATGGGTTTTCTCTCCCATTTGTGGCCTACTGGTAGAAGATTCTTCACTGCTCTTGGGTTGGATAGATGTTCCATATTGTGA 1863 0.4407 MTVHEDAEQEPVPQKKKPLSEAEKRKKKIVPGSLMKAVIRPGGGDSTPSDGDQVIYHCTVRTLDGVVVESTRSECGGKGTPIRHVLGKSKMILGLLEGMPTMLKGEVAMLKMKAELHYGEANCPLMVPDNFPKDDELHFEIEMLDFFKVKVISDDLGVLKKVINEGQGWESPREPYEVKAWISAKTGEGKEILSHTKGEPYFFTFGKSEVPKGLEMGTGTMTRGEKAVLYVTNQYITQSPLMPIIEGVEEVLFEVELVHFIQVRDMLGDGRLIKRRIHDGRGDFPMDCPLHDSLLRVHYKGMLLNEEKTVFYNTRVDNNGQPLEFGSGEGLVPEGLEMCVRLMLPGEIALVTCPPDYAYDKFPRPANVPEGAHVQWEIELLGFEMPKDWTGLNFEAIMDEADKIRGTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFLNARNSLHLNVAACYLKMGECRKSIEACNKVLDASPAHVKALYRRGMAYMSAGDFEEARNDFKMMMSIDKSCEPDATAALVKLKQKEQEVERKARSQFKGLFDKKPGDIAEAGVDDRGDKRLGENEKNDDKEDSDGDKEFQEAEDAPPPMGFLSHLWPTGRRFFTALGLDRCSIL* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0930 620 Gene3D Tetratricopeptide repeat domain 399 549 IPR011990 GO:0005515
Vvi8g0930 620 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 51 147 IPR001179 GO:0003755
Vvi8g0930 620 Gene3D - 2 149 IPR046357 GO:0003755
Vvi8g0930 620 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515
Vvi8g0930 620 MobiDBLite consensus disorder prediction 549 579 - -
Vvi8g0930 620 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 293 381 IPR001179 GO:0003755
Vvi8g0930 620 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 45 144 IPR001179 GO:0003755
Vvi8g0930 620 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 174 258 IPR001179 GO:0003755
Vvi8g0930 620 SUPERFAMILY TPR-like 398 540 IPR011990 GO:0005515
Vvi8g0930 620 FunFam Peptidylprolyl isomerase 389 545 - -
Vvi8g0930 620 SUPERFAMILY FKBP-like 152 260 - -
Vvi8g0930 620 SMART tpr_5 450 483 IPR019734 GO:0005515
Vvi8g0930 620 SMART tpr_5 484 517 IPR019734 GO:0005515
Vvi8g0930 620 SMART tpr_5 401 434 IPR019734 GO:0005515
Vvi8g0930 620 Gene3D - 264 398 IPR046357 GO:0003755
Vvi8g0930 620 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 261 IPR001179 GO:0003755
Vvi8g0930 620 FunFam Peptidylprolyl isomerase 262 386 - -
Vvi8g0930 620 FunFam Peptidylprolyl isomerase 151 261 - -
Vvi8g0930 620 Gene3D - 150 263 IPR046357 GO:0003755
Vvi8g0930 620 PANTHER INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 148 262 - -
Vvi8g0930 620 Pfam Tetratricopeptide repeat 485 509 IPR013105 -
Vvi8g0930 620 SUPERFAMILY FKBP-like 10 150 - -
Vvi8g0930 620 SUPERFAMILY FKBP-like 246 383 - -
Vvi8g0930 620 FunFam Peptidylprolyl isomerase 8 150 - -
Vvi8g0930 620 MobiDBLite consensus disorder prediction 549 597 - -
Vvi8g0930 620 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 384 IPR001179 GO:0003755
Vvi8g0930 620 MobiDBLite consensus disorder prediction 1 30 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0930 28 549 Calmodulin-binding Proteins AT3G25230 32.015 2.15e-69 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0930 - - vvi:100249394 1232.62