Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0913 ATGGCGGATGGTTTTGAACCCTACCACGTACCACAGCAGAGCAGAAGGGATAAGCTTAGAGTTGTGGCTCAGAACCACTCGGGCTGTGTGGAGGCAGCTACTAATCTTCACGGCTGCGCCGGTTTGCTCCCTCTCTACGATCCCTCACTGTTGCCTTCCGATTTGCTAACTTGCGCCAGCGCCAGCGCCCATGAGTTTCAGCACCATAGCCACCCACTTTCAGGCTCTGCTGAGGCTTGTAAGGCAAACCCAGGTTGTGTTGTTAAAGAAGAAGGCGTGAATTTGATGGGTTATGTTGGTGGAATCATGAATGCGTCTTCTTCTTCTTCGACTTCGCACCATCCTTACTTGGATCCGCAATCTTCGTTGCCCATAAACCCCAGCTCGATTCAGGATATGAACCATAACCCTTTTTTTTACGCTCCCCAAAACCTCAGAGATTTTGATCAGTCCTTCAATGGTGGTGAGATGGTGGTGTTCAAGCCGGAGCCCTTATCATTGACCCATCATGAGTCTAACACCACTGGGCAAGGGCTGTCTCTATCTCTGTCCTCTCACCATACCCACCAAAACAATCTTCCACTGGAACTGAATCTTCAAAGGTACGGGTCTGCAATTTTTAGCGATAAGGTTACTGGTGGCTATATGGTTCCGGGCATTGTTGGTGGTAGTGGTTCCACCTCTAATGATGTATCGAGGAGTTCCGTCCCTCTCGGGCCTTTTACAGGCTATGCTTCAATTTTGAAGGGATCGAGGTTCCTGAAACCTGCACAGCAGTTGTTGGAGGAGTTCTGCGACGTGGGCTGCGGACTTTACGCCGAAAGAGTCTCAGCGGATTCGTCGATGATGGATCCTCCAATGGAGAGTCTGAGTGGAACTGGAATTGTTGATGATCCGCTCAGTTGTGGAGATGGGGGGGAGCACCGGAGAAAAAAGTCGAGGCTAATTTCGATGCTAGACGAGGTTTACAGGAGGTACAAGCACTACTATCAACAAATGCAGGCAGTTGTAGCATCATTTGAATCGGTTGCTGGTCTCGGCAATGCGGCTCCCTATGCCGACTTGGCTCTGAAAGCTATGTCTAAACACTTCAGGTGTTTGAAGAATGCCATTACCGACCAGCTTCAGTTCACAAACAAAGCCCATGGACAAATAAGTCATGGAAAAGATGAAAGTCCAAGGTTTGGGAACACTGATAGAGGCCTTTATGGTCAAAGACCCATGCACAGCTCAGGATTTCTTGAACATCAACCTGTTTGGCGACCCCAAAGGGGACTTCCTGAGCGAGCTGTAACTGTACTCAGGGCATGGTTGTTTGAACACTTCCTTCACCCTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAGCAGACTGGTCTCTCCCGGAACCAGGTTTCCAACTGGTTCATCAATGCAAGAGTAAGACTTTGGAAGCCAATGGTGGAAGAGATACACACGCTGGAGACACGACAAGCTCAAAAATCTTCCCAGAGAGAGGAGCGAAGTGCCGACAGGCAGAGTGATCATTTACCTTCAGCAAACTCACTTGTGTTTGAAAATCCATCCACCTCTGCTCAAAGAGTTCAAGACGCCCCATCAAAACGTACCAGAAATGAGCTTTCTGAGGTACACGTGGGTAGTGAGGAGCCAATGAATTTATCTTACAATAACTTGTCGGCCCATCCGCATGTGGGAGTTGGTGTGAGCACTGCAGGTGGAAGCAGTAATGTTTCCCTGACACTGGGTCTTCACCAGAATAATGGGATTGGTTTATCAGAGTCCTTTCCTATTAATGCAGCTCAACGTTTTGGGCTTGGCCTTGATGCAAATAGCGAGGGATATGTTATAGGTGGTTTTGAAGCACAAAATCGGCATTTTGGAAGGGATGTTATTGGAGGGCAACTTTTACATGATTTTGTTGGCTGA 1929 0.4816 MADGFEPYHVPQQSRRDKLRVVAQNHSGCVEAATNLHGCAGLLPLYDPSLLPSDLLTCASASAHEFQHHSHPLSGSAEACKANPGCVVKEEGVNLMGYVGGIMNASSSSSTSHHPYLDPQSSLPINPSSIQDMNHNPFFYAPQNLRDFDQSFNGGEMVVFKPEPLSLTHHESNTTGQGLSLSLSSHHTHQNNLPLELNLQRYGSAIFSDKVTGGYMVPGIVGGSGSTSNDVSRSSVPLGPFTGYASILKGSRFLKPAQQLLEEFCDVGCGLYAERVSADSSMMDPPMESLSGTGIVDDPLSCGDGGEHRRKKSRLISMLDEVYRRYKHYYQQMQAVVASFESVAGLGNAAPYADLALKAMSKHFRCLKNAITDQLQFTNKAHGQISHGKDESPRFGNTDRGLYGQRPMHSSGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETRQAQKSSQREERSADRQSDHLPSANSLVFENPSTSAQRVQDAPSKRTRNELSEVHVGSEEPMNLSYNNLSAHPHVGVGVSTAGGSSNVSLTLGLHQNNGIGLSESFPINAAQRFGLGLDANSEGYVIGGFEAQNRHFGRDVIGGQLLHDFVG* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0913 642 Pfam Homeobox KN domain 437 476 IPR008422 GO:0003677|GO:0006355
Vvi8g0913 642 SUPERFAMILY Homeodomain-like 422 486 IPR009057 -
Vvi8g0913 642 MobiDBLite consensus disorder prediction 509 532 - -
Vvi8g0913 642 ProSiteProfiles 'Homeobox' domain profile. 417 480 IPR001356 GO:0003677
Vvi8g0913 642 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 123 502 - -
Vvi8g0913 642 MobiDBLite consensus disorder prediction 489 508 - -
Vvi8g0913 642 FunFam BEL1-like homeodomain protein 9 423 485 - -
Vvi8g0913 642 Gene3D - 423 485 - -
Vvi8g0913 642 SMART prehox3 242 373 IPR006563 -
Vvi8g0913 642 MobiDBLite consensus disorder prediction 489 547 - -
Vvi8g0913 642 CDD homeodomain 420 481 IPR001356 GO:0003677
Vvi8g0913 642 Pfam Associated with HOX 247 372 IPR006563 -
Vvi8g0913 642 SMART HOX_1 420 484 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0913 Vvi-Chr8 15382197 15387352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0913 149 642 Homeobox Transcription Factor Family AT5G02030 50.377 3.15e-126 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi8g0913 POX 2.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0913 - - vvi:100266680 1265.37