Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0907 ATGGGAAACCTTAGTCATGCATCTCCAAAGTTTCCTTGCATTCTTCTCACCCTTCTCATCTCTTACCTCTTCTCTTTTGCAACTTGCAAAACCCACAACTTTTTGCAAAGAGGCTCCTCTCTATCTGTGGAAGATGATTCAGACTACATCACCTCCCCAGACAGATCATTCACTTGTGGTTTCTATGGGGCGGGGGAAAATGCTTACTGGTTTTCAATATGGTTCACAAATTCTAAGGAAAGAACTGTGGTTTGGATGGCCAATCGTGACAGACCTGTCAATGGCCGGGGCTCCAGGATTTCACTGCGGCGAGATGGCATCATGAACCTAAGGGATGCTGATGGCTCAACTGTTTGGGAGACTAACACTACCTCCACCGATGTTGATCGAGCAGAGCTTTTGGACACTGGAAACCTTGTTCTGAAGAACCCACATGGTAAAATTCTATGGCAAAGCTTTGATTTTCCTACTGATACTCTTCTGCCAAACCAAATCCTTACCAGGAGGACAAAGCTGATCTCTATAATCAGAGGAGGGGATTTTTCTTCTGGTTACTATATCTTATATTTTGATAATGACAACATCTTGAGAATGATGTATGACGGGCCATCTATATCAAGCTTGTATTGGCCTAATCCTGATTTGGGTATTTTGCCAAATAAAAGAAGAAACTCTAACAGTAGCAGAATTGCTGTTCTAGATGAAATGGGGAGGTTTCTTTCGAGTGATAACGCGTCTTTCAGAGCTTCTGACATGGGCTTGGGAGTCAAAAGGAGGCTGACAATTGGCTACGATGGAAACCTGAGACTCTATAGCTTAAATCATTCCACTGGGTTATGGATGATCTCCTGGATGGCTTTTGGAGAACGGAATAGAGTGCATGGGCTGTGTGGTAGAAATGGGATTTGTGTTTACACACCAGAACCCAAGTGTTCTTGTCCTCCGGGTTATGAGGTAAGTGACCCAAGTGACTGGAGCAAAGGTTGCAAGTCTAAGTTCCACCGAAGCTGTTCCCGACCACAGCAGGTAAAATTTGTGGAGCTTCCCCATACAGATTTCTATGGGTCTGATGTCAATCACCTCACATCTGTTTCATTAGAAACTTGCAGGAAAACCTGCTTGGAGGATTGCCTTTGTGAAGCATTCGCCTATAGGCTAACAGGAAATGGGCTCTGTTTCAACAAAATTGCCCTTTTCAATGGCTTCAGGTCTCCGAATTTCCCAGGGACTATATATTTAAAACTGCCAGTGGATGTCGAAACATCAGCATCCACCCTTGTTAATGTTTCTAATCCCATATGCGAGTCCAAGGAAGTTGAGATTGTGCTGAGTTCTCCTTCTATGTATGACACCGCCAATAAAGGGATGAGATGGGTTTATCTCTACTCATTTGCTTCTGCCCTTGGTGCGCTGGAAGTCCTCTTTATCGTGTCAGGTTGGTGGTTTCTCTTCAGGGTACCTAAGGTGACATCTCCAGTTGAAGATGGATATGGTCCGATATCAAGCCAGTTCAGGAAATTTAGCTACACCGAACTTAAGAAGGCAACCAACAATTTCAAAGTAGAGCTTGGAAGAGGAGGCTTTGGGGCTGTTTATAAGGGTATTCTGGAGGATGAAAGGGTAGTAGCTGTGAAGAAATTGAGAGATGTCATTCAAGGGGAAGGGGAGTTTTGGGCTGAAATAAGCACAATCAGAAAAATTTATCATATGAACCTTGTTAGAATGTGGGGATTCTGTTCAGAGGGTAGACACAGACTTTTAGTCTACGAGCATGTAGAAAATCTGTCTCTGGATAAGCATCTCTTCAGCACGACTTTTCTGGGATGGAAAGAGAGGTTTAACGTTGCAGTGGGGACAGCAAGGGGTTTAGCCTACCTTCACCATGAGTGTCTAGAATGGGTCATCCATTGTGACGTGAAGCCGGAAAATATACTTCTAGACAATGGGTTTGAACCAAAGATTGCAGATTTTGGGCTAGCAAAGCTGTCTCAGAGAGGTGGCCCCGGTTCCAGAGAATTCTCTCGGATTCGGGGGACTAAAGGTTACATGGCTCCAGAGTGGGCTATGAATCTTCCAATTACAGCAAAAGTTGATGTTTACAGCTTTGGAGTAGTTGTTCTAGAGATGGTGAGGGGAATTCGGCTTTCAAATTGGGTGATGGAAGATGGCAAGGAGCAGGAAGCAGAGCTGACGAGGTTTGTCAAGTTAGTGAAAGAGAAAATTCAATGTGAAGAAGACAATTGGATAGATGATACAGTGGACCGGAGATTGAAGGGGAGGTTTAGCAGGCACCAGGCAGCAACATTGATCGAGATAGGTATTTCTTGCGTGGAGGAGGATAGAAGCAAAAGACCAACAATGGCTACCGTAGTCCAAGTTCTACTGGAATGTGAAGATGAAGCCCAAGTTCAAATCCAGGAGTTGGAGTAA 2430 0.4428 MGNLSHASPKFPCILLTLLISYLFSFATCKTHNFLQRGSSLSVEDDSDYITSPDRSFTCGFYGAGENAYWFSIWFTNSKERTVVWMANRDRPVNGRGSRISLRRDGIMNLRDADGSTVWETNTTSTDVDRAELLDTGNLVLKNPHGKILWQSFDFPTDTLLPNQILTRRTKLISIIRGGDFSSGYYILYFDNDNILRMMYDGPSISSLYWPNPDLGILPNKRRNSNSSRIAVLDEMGRFLSSDNASFRASDMGLGVKRRLTIGYDGNLRLYSLNHSTGLWMISWMAFGERNRVHGLCGRNGICVYTPEPKCSCPPGYEVSDPSDWSKGCKSKFHRSCSRPQQVKFVELPHTDFYGSDVNHLTSVSLETCRKTCLEDCLCEAFAYRLTGNGLCFNKIALFNGFRSPNFPGTIYLKLPVDVETSASTLVNVSNPICESKEVEIVLSSPSMYDTANKGMRWVYLYSFASALGALEVLFIVSGWWFLFRVPKVTSPVEDGYGPISSQFRKFSYTELKKATNNFKVELGRGGFGAVYKGILEDERVVAVKKLRDVIQGEGEFWAEISTIRKIYHMNLVRMWGFCSEGRHRLLVYEHVENLSLDKHLFSTTFLGWKERFNVAVGTARGLAYLHHECLEWVIHCDVKPENILLDNGFEPKIADFGLAKLSQRGGPGSREFSRIRGTKGYMAPEWAMNLPITAKVDVYSFGVVVLEMVRGIRLSNWVMEDGKEQEAELTRFVKLVKEKIQCEEDNWIDDTVDRRLKGRFSRHQAATLIEIGISCVEEDRSKRPTMATVVQVLLECEDEAQVQIQELE* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0907 809 CDD PAN_AP_plant 333 416 - -
Vvi8g0907 809 PANTHER OS07G0415500 PROTEIN 15 796 - -
Vvi8g0907 809 SMART serkin_6 517 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0907 809 Pfam S-locus glycoprotein domain 256 318 IPR000858 GO:0048544
Vvi8g0907 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vvi8g0907 809 SMART blect_4 41 156 IPR001480 -
Vvi8g0907 809 Pfam PAN-like domain 344 393 IPR003609 -
Vvi8g0907 809 ProSiteProfiles Bulb-type lectin domain profile. 26 154 IPR001480 -
Vvi8g0907 809 Gene3D - 28 154 IPR036426 -
Vvi8g0907 809 ProSiteProfiles PAN/Apple domain profile. 337 417 IPR003609 -
Vvi8g0907 809 CDD B_lectin 49 156 IPR001480 -
Vvi8g0907 809 Coils Coil 798 809 - -
Vvi8g0907 809 FunFam Serine/threonine-protein kinase 32 154 - -
Vvi8g0907 809 CDD STKc_IRAK 523 796 - -
Vvi8g0907 809 PIRSF SRK 5 808 IPR024171 GO:0004674
Vvi8g0907 809 Pfam D-mannose binding lectin 82 169 IPR001480 -
Vvi8g0907 809 Gene3D Phosphorylase Kinase; domain 1 492 591 - -
Vvi8g0907 809 FunFam S-receptor-like serine/threonine-protein kinase 488 591 - -
Vvi8g0907 809 Pfam Protein kinase domain 520 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0907 809 CDD EGF 292 318 - -
Vvi8g0907 809 FunFam Serine/threonine-protein kinase 592 802 - -
Vvi8g0907 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 213 IPR036426 -
Vvi8g0907 809 ProSiteProfiles EGF-like domain profile. 289 323 IPR000742 -
Vvi8g0907 809 Gene3D Transferase(Phosphotransferase) domain 1 592 808 - -
Vvi8g0907 809 SUPERFAMILY Protein kinase-like (PK-like) 501 795 IPR011009 -
Vvi8g0907 809 ProSitePatterns Protein kinases ATP-binding region signature. 523 546 IPR017441 GO:0005524
Vvi8g0907 809 ProSiteProfiles Protein kinase domain profile. 517 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0907 Vvi-Chr8 15345460 15347889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0907 498 803 Trihelix Transcription Factor Family AT5G38560 42.122 2.10e-66 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi8g0907 Pkinase 3.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0907 - - vvi:100242625 1666.74